PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE
PGV is a Ligand Of Interest in 2DYS designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 2DYS_PGV_C_307 | 78% | 49% | 0.12 | 0.963 | 0.98 | 0.99 | 3 | 5 | 7 | 0 | 100% | 1 |
| 2DYS_PGV_P_307 | 74% | 54% | 0.133 | 0.965 | 0.93 | 0.87 | 2 | 2 | 7 | 0 | 100% | 1 |
| 2DYS_PGV_N_609 | 72% | 42% | 0.142 | 0.967 | 1.12 | 1.12 | 4 | 5 | 6 | 0 | 100% | 1 |
| 2DYS_PGV_A_607 | 70% | 47% | 0.151 | 0.968 | 0.99 | 1.07 | 3 | 3 | 8 | 0 | 100% | 1 |
| 2DYS_PGV_A_606 | 7% | 43% | 0.296 | 0.748 | 1.16 | 1.05 | 3 | 4 | 4 | 0 | 100% | 1 |
| 2DYS_PGV_N_608 | 6% | 43% | 0.36 | 0.789 | 1.2 | 1.02 | 4 | 4 | 5 | 0 | 100% | 1 |
| 2DYS_PGV_C_308 | 2% | 41% | 0.387 | 0.688 | 1.44 | 0.87 | 5 | 1 | 1 | 0 | 100% | 1 |
| 2DYS_PGV_P_308 | 2% | 41% | 0.387 | 0.682 | 1.43 | 0.89 | 6 | 2 | 1 | 0 | 100% | 1 |
| 5B1A_PGV_P_303 | 98% | 35% | 0.064 | 0.985 | 1.06 | 1.51 | 3 | 13 | 4 | 0 | 100% | 1 |
| 5X1B_PGV_C_302 | 95% | 52% | 0.078 | 0.981 | 0.92 | 0.93 | 2 | 4 | 0 | 0 | 100% | 1 |
| 5B1B_PGV_C_302 | 94% | 56% | 0.078 | 0.979 | 0.81 | 0.87 | 1 | 1 | 3 | 0 | 100% | 1 |
| 7YPY_PGV_P_302 | 94% | 54% | 0.079 | 0.978 | 0.79 | 0.99 | 2 | 2 | 1 | 0 | 100% | 1 |
| 7COH_PGV_C_267 | 93% | 49% | 0.087 | 0.983 | 0.87 | 1.09 | 3 | 3 | 0 | 0 | 100% | 1 |
| 5ZCQ_PGV_N_608 | 90% | 32% | 0.094 | 0.978 | 1.15 | 1.53 | 5 | 8 | 1 | 0 | 100% | 1 |
