2Y4L | pdb_00002y4l


GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 2Y4L designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2Y4L_GDP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2Y4L_GDP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter2Y4L_GDP_A_401Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
2Y4L_GDP_A_401 86% 31% 0.109 0.9771.21 1.53 2 700100%1
2Y4L_GDP_B_401 76% 35% 0.123 0.9611.13 1.41 2 500100%1
2Y4K_GDP_B_401 80% 47% 0.107 0.9560.96 1.08 1 400100%1
2BO7_GDP_B_1383 76% 37% 0.136 0.9731.04 1.41 1 540100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
9BL0_GDP_A_201 100% 46% 0.016 0.9980.96 1.11 1 210100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
9BAJ_GDP_A_203 100% 41% 0.032 0.9941.22 1.1 2 210100%1