Ligand validation:2YP9

NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose

NAG is a Ligand Of Interest in 2YP9 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
2YP9_NAG_A_1063	23%	66%	0.245	0.87	0.5	0.81	-	-	0	0	100%	0.9333
2YP9_NAG_A_1285	21%	55%	0.243	0.854	0.71	1.03	-	1	0	0	100%	0.9333
2YP9_NAG_A_1038	13%	61%	0.239	0.781	0.37	1.12	-	1	0	0	100%	0.9333
2YP9_NAG_A_1133	6%	49%	0.245	0.683	0.77	1.19	-	1	0	1	100%	0.9333
2YP9_NAG_A_1126	2%	50%	0.405	0.655	0.65	1.25	-	2	0	0	100%	0.9333
8FAW_NAG_A_601	73%	34%	0.115	0.941	0.67	1.92	-	4	1	0	100%	0.9333
4WE8_NAG_A_608	64%	57%	0.152	0.95	0.49	1.14	-	1	0	0	100%	0.9333
2YP2_NAG_A_812	59%	50%	0.115	0.896	0.74	1.19	-	2	0	0	100%	0.9333
8FAQ_NAG_A_602	52%	61%	0.151	0.907	0.43	1.05	-	1	0	0	100%	0.9333
4WE9_NAG_A_608	47%	81%	0.158	0.897	0.32	0.5	-	-	0	0	100%	0.9333
3PPS_NAG_B_760	100%	44%	0.028	0.993	0.57	1.57	-	3	0	0	100%	0.9333
4AKM_NAG_A_1379	100%	67%	0.029	0.994	0.54	0.73	-	-	0	0	100%	0.9333
3CQL_NAG_B_244	100%	68%	0.029	0.987	0.42	0.8	-	-	0	0	100%	1
3RIK_NAG_D_509	100%	8%	0.035	0.991	2.03	2.54	4	7	2	0	100%	0.9333
5VEM_NAG_B_509	100%	74%	0.003	0.957	0.46	0.56	-	-	0	0	100%	0.9333

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.