Ligand validation:3FRK


TQP: (2R,3R,4S,5S,6R)-3,5-dihydroxy-4-{[(1E)-{3-hydroxy-2-methyl-5-[(phosphonooxy)methyl]pyridin-4-yl}methylidene]amino}-6-methyltetrahydro-2H-pyran-2-yl [(2R,3S,5R)-3-hydroxy-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)tetrahydrofuran-2-yl]methyl dihydrogen diphosphate

TQP is a Ligand Of Interest in 3FRK designated by the RCSB


Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3FRK_TQP_A_374Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3FRK_TQP_A_374Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3FRK_TQP_A_374 84% 17% 0.114 0.9761.23 2.37 4 18 30100%1
3FRK_TQP_B_374 81% 22% 0.117 0.9691.11 2.09 3 18 10100%1
5U23_TQP_C_402 97% 15% 0.067 0.9821.77 1.99 7 18 00100%1
5U21_TQP_A_402 96% 13% 0.071 0.9821.81 2.14 7 1600100%1
7N63_TQP_A_401 78% 13% 0.099 0.9421.95 2.06 13 1500100%0.95