UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3MJ4 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
3MJ4_UDP_C_500 | 68% | 34% | 0.145 | 0.956 | 0.86 | 1.72 | 1 | 6 | 0 | 0 | 100% | 1 |
3MJ4_UDP_J_500 | 63% | 33% | 0.156 | 0.951 | 0.89 | 1.74 | - | 7 | 1 | 0 | 100% | 1 |
3MJ4_UDP_H_500 | 62% | 33% | 0.156 | 0.949 | 0.9 | 1.72 | - | 7 | 0 | 0 | 100% | 1 |
3MJ4_UDP_F_500 | 59% | 36% | 0.158 | 0.942 | 0.9 | 1.59 | 1 | 6 | 0 | 0 | 100% | 1 |
3MJ4_UDP_G_500 | 58% | 34% | 0.161 | 0.94 | 0.87 | 1.71 | - | 7 | 0 | 0 | 100% | 1 |
3MJ4_UDP_A_500 | 57% | 31% | 0.175 | 0.95 | 0.94 | 1.79 | - | 9 | 1 | 0 | 100% | 1 |
3MJ4_UDP_I_500 | 53% | 34% | 0.17 | 0.959 | 0.92 | 1.68 | - | 5 | 0 | 0 | 84% | 0.84 |
3MJ4_UDP_E_500 | 35% | 36% | 0.183 | 0.902 | 0.92 | 1.58 | 1 | 5 | 0 | 0 | 84% | 0.84 |
3MJ4_UDP_B_500 | 19% | 38% | 0.319 | 0.915 | 0.87 | 1.54 | - | 7 | 4 | 0 | 100% | 1 |
3HE3_UDP_G_400 | 85% | 36% | 0.118 | 0.985 | 0.94 | 1.55 | 1 | 7 | 0 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
2B69_UDP_A_900 | 100% | 42% | 0.046 | 0.992 | 1.03 | 1.21 | 2 | 4 | 0 | 0 | 100% | 1 |
1GX4_UDP_A_401 | 100% | 32% | 0.046 | 0.991 | 1.68 | 1.03 | 2 | 3 | 0 | 0 | 100% | 1 |
3U2V_UDP_B_270 | 99% | 33% | 0.049 | 0.989 | 1.12 | 1.52 | 2 | 6 | 0 | 0 | 100% | 1 |