UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 3PE3 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 3PE3_UDP_D_1201 | 74% | 44% | 0.157 | 0.987 | 1.15 | 1.02 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3PE3_UDP_A_1201 | 73% | 45% | 0.159 | 0.986 | 1.15 | 0.98 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3PE3_UDP_B_1201 | 66% | 45% | 0.18 | 0.986 | 1.1 | 1.02 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3PE3_UDP_C_1201 | 55% | 41% | 0.198 | 0.969 | 1.13 | 1.16 | 1 | 2 | 1 | 0 | 100% | 1 |
| 4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
| 4GZ3_UDP_A_1101 | 99% | 35% | 0.045 | 0.983 | 1.08 | 1.47 | 1 | 5 | 0 | 0 | 100% | 1 |
| 4N39_UDP_A_1201 | 96% | 37% | 0.08 | 0.987 | 0.91 | 1.53 | - | 5 | 0 | 0 | 100% | 1 |
| 3PE4_UDP_A_1212 | 94% | 36% | 0.079 | 0.976 | 1.03 | 1.49 | 2 | 4 | 0 | 0 | 100% | 1 |
| 5LWV_UDP_A_1201 | 93% | 27% | 0.088 | 0.983 | 1.04 | 1.87 | 2 | 11 | 0 | 0 | 100% | 1 |
| 8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
| 8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
| 8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
| 2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |
| 4PHR_UDP_A_301 | 100% | 42% | 0.042 | 0.989 | 0.84 | 1.41 | - | 4 | 0 | 0 | 100% | 1 |
