3SWD | pdb_00003swd


EPZ: (2R)-2-{[(2R,3R,4R,5S,6R)-3-(acetylamino)-2-{[(S)-{[(R)-{[(2R,3S,4R,5R)-5-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3,4-dihydroxytetrahydrofuran-2-yl]methoxy}(hydroxy)phosphoryl]oxy}(hydroxy)phosphoryl]oxy}-5-hydroxy-6-(hydroxymethyl)tetrahydro-2H-pyran-4-yl]oxy}propanoic acid

EPZ is a Ligand Of Interest in 3SWD designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3SWD_EPZ_B_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter3SWD_EPZ_B_501Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
3SWD_EPZ_B_501 75% 25% 0.134 0.9681.38 1.64 6 830100%1
3SWD_EPZ_D_501 74% 24% 0.141 0.9721.48 1.64 10 900100%1
3SWD_EPZ_H_501 73% 26% 0.142 0.9711.44 1.55 6 800100%1
3SWD_EPZ_J_501 73% 27% 0.142 0.9711.33 1.62 7 740100%1
3SWD_EPZ_K_501 72% 25% 0.144 0.971.41 1.65 7 650100%1
3SWD_EPZ_E_501 70% 26% 0.158 0.9781.39 1.59 7 1100100%1
3SWD_EPZ_F_501 70% 22% 0.159 0.9771.62 1.59 9 800100%1
3SWD_EPZ_C_501 69% 23% 0.157 0.9731.5 1.66 8 820100%1
3SWD_EPZ_A_501 65% 26% 0.169 0.9711.46 1.56 9 900100%1
3SWD_EPZ_G_501 57% 26% 0.182 0.9581.33 1.63 6 920100%1
3SWD_EPZ_L_501 57% 26% 0.184 0.9591.32 1.64 4 920100%1
3SWD_EPZ_I_501 55% 30% 0.175 0.9451.31 1.49 8 740100%1
6Q0A_EPZ_A_502 99% 65% 0.056 0.9850.54 0.81 - 100100%1
6DNT_EPZ_A_402 97% 72% 0.065 0.9770.41 0.65 - -10100%0.986
7F3V_EPZ_C_301 96% 62% 0.07 0.9790.64 0.82 - 100100%1
3SU9_EPZ_A_427 95% 28% 0.072 0.9781.3 1.59 6 820100%1
3SWG_EPZ_A_518 88% 21% 0.097 0.9731.79 1.56 7 1000100%1