UDP: URIDINE-5'-DIPHOSPHATE
UDP is a Ligand Of Interest in 4D11 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
4D11_UDP_A_1572 | 67% | 23% | 0.159 | 0.969 | 1.29 | 1.88 | 3 | 9 | 0 | 0 | 100% | 1 |
4D11_UDP_E_1572 | 63% | 22% | 0.166 | 0.961 | 1.33 | 1.89 | 2 | 6 | 1 | 0 | 100% | 1 |
4D11_UDP_B_1573 | 58% | 24% | 0.164 | 0.942 | 1.24 | 1.86 | 2 | 7 | 0 | 0 | 100% | 1 |
4D11_UDP_F_1364 | 56% | 26% | 0.164 | 0.935 | 1.22 | 1.74 | 2 | 6 | 0 | 0 | 100% | 1 |
4D11_UDP_C_1571 | 47% | 25% | 0.184 | 0.922 | 1.23 | 1.82 | 2 | 7 | 0 | 0 | 100% | 1 |
4D11_UDP_D_1571 | 40% | 23% | 0.207 | 0.92 | 1.3 | 1.83 | 1 | 7 | 0 | 0 | 100% | 1 |
8X3Q_UDP_C_401 | 100% | 3% | 0.015 | 0.998 | 3.32 | 2.69 | 13 | 13 | 0 | 0 | 100% | 1 |
8X3U_UDP_B_401 | 100% | 3% | 0.012 | 0.999 | 3.31 | 2.68 | 13 | 13 | 2 | 0 | 100% | 1 |
8VH8_UDP_C_704 | 100% | 62% | 0.032 | 0.995 | 0.55 | 0.9 | - | 1 | 0 | 0 | 100% | 1 |
4GYW_UDP_C_1101 | 100% | 37% | 0.037 | 0.988 | 1.03 | 1.45 | 2 | 4 | 0 | 0 | 100% | 1 |
2IV7_UDP_A_1372 | 100% | 40% | 0.035 | 0.984 | 0.85 | 1.49 | - | 4 | 0 | 0 | 100% | 1 |