KDO: 3-deoxy-alpha-D-manno-oct-2-ulopyranosonic acid
KDO is a Ligand Of Interest in 4G8A designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4G8A_KDO_C_206 | 61% | 54% | 0.136 | 0.935 | 0.67 | 1.09 | - | 1 | 0 | 0 | 94% | 0.9375 |
| 4G8A_KDO_D_206 | 11% | 43% | 0.183 | 0.711 | 0.84 | 1.36 | - | 2 | 0 | 0 | 94% | 0.9375 |
| 3DUR_KDO_A_303 | 100% | 29% | 0.021 | 0.994 | 1.55 | 1.32 | 3 | 2 | 0 | 0 | 100% | 1 |
| 3DUU_KDO_B_114 | 100% | 43% | 0.022 | 0.993 | 1.01 | 1.21 | 1 | 1 | 0 | 0 | 100% | 1 |
| 3DUS_KDO_C_108 | 100% | 46% | 0.034 | 0.985 | 1 | 1.09 | 1 | 1 | 0 | 0 | 100% | 1 |
| 8FUX_KDO_A_405 | 97% | 8% | 0.054 | 0.982 | 2.76 | 1.86 | 3 | 8 | 0 | 0 | 94% | 0.9375 |
| 3K8D_KDO_D_1244 | 96% | 10% | 0.064 | 0.983 | 2.6 | 1.77 | 6 | 6 | 0 | 1 | 94% | 0.9375 |
