Ligand validation:4Y28

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4Y28 designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
4Y28_CLA_B_1203	48%	7%	0.221	0.964	2.33	2.6	19	22	3	1	100%	1
4Y28_CLA_B_1240	47%	6%	0.189	0.93	2.36	2.6	19	25	8	1	100%	1
4Y28_CLA_1_1012	46%	5%	0.161	0.939	2.57	2.89	20	23	15	1	77%	0.7692
4Y28_CLA_F_1302	46%	4%	0.161	0.937	2.62	2.94	18	21	6	1	77%	0.7692
4Y28_CLA_B_1202	44%	6%	0.221	0.952	2.35	2.65	19	23	5	1	100%	1
4Y28_CLA_A_1136	44%	5%	0.17	0.922	2.56	2.78	20	25	6	1	86%	0.8615
4Y28_CLA_B_1201	43%	4%	0.177	0.941	2.7	2.86	20	24	1	1	77%	0.7692
4Y28_CLA_B_1206	42%	6%	0.212	0.934	2.39	2.6	19	24	5	1	100%	1
4Y28_CLA_A_1121	42%	5%	0.175	0.921	2.58	2.86	20	24	3	1	85%	0.8462
4Y28_CLA_A_1128	41%	7%	0.207	0.921	2.37	2.51	19	21	10	1	100%	1
4Y28_CLA_4_4012	40%	7%	0.209	0.922	2.21	2.68	18	26	25	1	100%	1
4Y28_CLA_A_1120	39%	6%	0.181	0.9	2.46	2.7	19	21	1	1	92%	0.9231
4Y28_CLA_B_1235	38%	6%	0.218	0.921	2.36	2.64	19	22	1	1	100%	1
4Y28_CLA_B_1238	38%	6%	0.223	0.926	2.39	2.55	20	21	9	1	100%	1
4Y28_CLA_2_2003	38%	5%	0.164	0.893	2.38	3.05	18	24	25	1	85%	0.8462
4Y28_CLA_B_1226	38%	7%	0.229	0.932	2.35	2.55	19	22	5	1	100%	1
4Y28_CLA_B_1219	38%	6%	0.205	0.921	2.48	2.6	20	21	2	1	92%	0.9231
4Y28_CLA_1_1003	37%	5%	0.186	0.911	2.42	2.83	21	26	28	1	85%	0.8462
4Y28_CLA_G_1002	37%	4%	0.193	0.942	2.74	2.93	20	22	21	1	71%	0.7077
4Y28_CLA_B_1221	37%	6%	0.238	0.935	2.38	2.62	20	25	11	1	100%	1
4Y28_CLA_4_4009	36%	5%	0.199	0.934	2.48	2.93	19	22	4	1	77%	0.7692
4Y28_CLA_B_1207	36%	6%	0.229	0.923	2.37	2.62	20	23	8	0	100%	1
4Y28_CLA_A_1119	36%	7%	0.229	0.923	2.37	2.54	19	23	6	1	100%	1
4Y28_CLA_A_1122	36%	7%	0.229	0.922	2.37	2.53	19	22	2	1	100%	1
4Y28_CLA_B_1223	35%	6%	0.216	0.907	2.34	2.6	19	24	3	0	100%	1
4Y28_CLA_B_1230	35%	5%	0.203	0.913	2.48	2.86	17	22	8	1	89%	0.8923
4Y28_CLA_A_1125	35%	6%	0.218	0.921	2.43	2.69	19	24	2	1	92%	0.9231
4Y28_CLA_G_1001	35%	5%	0.165	0.879	2.43	2.88	18	28	26	1	85%	0.8462
4Y28_CLA_2_2004	35%	7%	0.219	0.906	2.36	2.51	17	23	15	1	100%	1
4Y28_CLA_B_1208	34%	5%	0.193	0.905	2.6	2.82	20	22	4	1	85%	0.8462
4Y28_CLA_4_4005	34%	6%	0.212	0.908	2.28	2.84	18	27	15	1	92%	0.9231
4Y28_CLA_A_1102	34%	4%	0.195	0.918	2.71	2.86	19	21	3	1	77%	0.7692
4Y28_CLA_B_1204	33%	5%	0.203	0.912	2.61	2.78	19	21	8	1	85%	0.8462
4Y28_CLA_A_1137	33%	5%	0.222	0.931	2.58	2.74	20	22	2	1	85%	0.8462
4Y28_CLA_B_1220	33%	7%	0.234	0.915	2.37	2.47	20	23	9	0	100%	1
4Y28_CLA_B_1239	33%	6%	0.239	0.919	2.37	2.58	20	22	4	1	100%	1
4Y28_CLA_B_1211	33%	6%	0.227	0.905	2.34	2.63	19	25	6	1	100%	1
4Y28_CLA_B_1205	33%	7%	0.263	0.942	2.36	2.46	19	23	5	1	100%	1
4Y28_CLA_2_2009	32%	4%	0.185	0.902	2.57	2.94	20	23	11	1	77%	0.7692
4Y28_CLA_A_1101	32%	6%	0.229	0.905	2.36	2.65	19	22	6	1	100%	1
4Y28_CLA_2_2008	31%	4%	0.2	0.911	2.48	3.32	19	30	10	1	77%	0.7692
4Y28_CLA_4_4003	30%	7%	0.23	0.895	2.25	2.59	20	24	3	1	100%	1
4Y28_CLA_1_1007	30%	4%	0.194	0.91	2.65	3.16	19	21	9	1	71%	0.7077
4Y28_CLA_B_1209	30%	4%	0.217	0.932	2.91	2.85	19	19	2	1	71%	0.7077
4Y28_CLA_A_1138	29%	7%	0.256	0.917	2.4	2.48	20	24	3	1	100%	1
4Y28_CLA_A_1109	29%	6%	0.224	0.883	2.37	2.58	19	22	7	1	100%	1
4Y28_CLA_B_1227	29%	6%	0.234	0.893	2.37	2.59	20	24	6	1	100%	1
4Y28_CLA_A_1139	29%	7%	0.248	0.906	2.37	2.56	20	23	4	1	100%	1
4Y28_CLA_B_1021	29%	6%	0.249	0.907	2.37	2.64	18	23	6	1	100%	1
4Y28_CLA_A_1022	29%	7%	0.239	0.896	2.38	2.48	19	23	7	1	100%	1
4Y28_CLA_1_1004	28%	7%	0.234	0.89	2.22	2.65	19	23	21	1	100%	1
4Y28_CLA_B_1216	28%	6%	0.245	0.901	2.38	2.56	20	23	6	1	100%	1
4Y28_CLA_A_1124	28%	5%	0.233	0.916	2.59	2.85	20	23	4	1	85%	0.8462
4Y28_CLA_A_1133	28%	5%	0.228	0.908	2.58	2.77	20	22	3	0	85%	0.8462
4Y28_CLA_B_1229	27%	6%	0.26	0.909	2.37	2.6	20	23	5	1	100%	1
4Y28_CLA_A_1111	27%	6%	0.24	0.902	2.46	2.64	19	24	7	1	92%	0.9231
4Y28_CLA_B_1232	27%	5%	0.222	0.897	2.58	2.74	20	21	2	1	85%	0.8462
4Y28_CLA_A_1103	27%	6%	0.246	0.893	2.34	2.61	20	24	6	1	100%	1
4Y28_CLA_1_1014	27%	4%	0.175	0.872	2.7	3.07	19	22	13	1	71%	0.7077
4Y28_CLA_B_1023	26%	7%	0.24	0.885	2.36	2.55	19	24	4	1	100%	1
4Y28_CLA_1_1002	26%	4%	0.188	0.883	2.63	3.08	18	22	15	1	71%	0.7077
4Y28_CLA_A_1116	26%	5%	0.251	0.908	2.47	2.75	19	22	5	1	92%	0.9231
4Y28_CLA_L_1502	26%	6%	0.233	0.888	2.34	2.73	18	24	12	1	92%	0.9231
4Y28_CLA_A_1129	26%	4%	0.236	0.919	2.7	2.92	19	23	1	1	77%	0.7692
4Y28_CLA_B_1236	25%	5%	0.239	0.905	2.58	2.84	19	22	5	1	85%	0.8462
4Y28_CLA_B_1218	25%	6%	0.253	0.89	2.37	2.63	20	22	7	1	100%	1
4Y28_CLA_1_1005	25%	5%	0.207	0.87	2.39	2.89	19	26	8	1	85%	0.8462
4Y28_CLA_B_1012	25%	7%	0.272	0.908	2.36	2.5	19	22	6	1	100%	1
4Y28_CLA_A_1126	25%	6%	0.282	0.917	2.38	2.56	20	23	9	1	100%	1
4Y28_CLA_A_1131	25%	7%	0.297	0.932	2.37	2.56	20	21	3	1	100%	1
4Y28_CLA_B_1210	24%	7%	0.281	0.914	2.34	2.56	19	23	7	1	100%	1
4Y28_CLA_A_1132	24%	7%	0.284	0.917	2.37	2.56	20	23	4	1	100%	1
4Y28_CLA_A_1130	24%	4%	0.23	0.901	2.74	2.94	20	21	3	0	77%	0.7692
4Y28_CLA_2_2005	24%	5%	0.253	0.91	2.49	2.76	18	24	15	1	85%	0.8462
4Y28_CLA_A_1237	23%	5%	0.294	0.935	2.46	2.8	19	23	4	1	92%	0.9231
4Y28_CLA_1_1001	23%	6%	0.204	0.841	2.3	2.74	19	21	43	1	92%	0.9231
4Y28_CLA_B_1231	23%	6%	0.228	0.865	2.5	2.6	20	23	2	1	92%	0.9231
4Y28_CLA_A_1140	23%	6%	0.28	0.904	2.39	2.55	20	23	3	1	100%	1
4Y28_CLA_A_1106	22%	6%	0.277	0.898	2.39	2.61	20	23	5	1	100%	1
4Y28_CLA_B_1225	22%	7%	0.297	0.918	2.38	2.52	20	21	3	1	100%	1
4Y28_CLA_B_1224	22%	6%	0.299	0.919	2.36	2.58	19	23	5	1	100%	1
4Y28_CLA_3_3013	22%	5%	0.191	0.859	2.77	2.67	20	20	21	1	71%	0.7077
4Y28_CLA_B_1213	22%	6%	0.231	0.861	2.47	2.67	18	22	2	0	92%	0.9231
4Y28_CLA_4_4004	22%	6%	0.245	0.875	2.31	2.68	18	24	16	1	92%	0.9231
4Y28_CLA_A_1013	22%	6%	0.316	0.934	2.36	2.58	20	23	6	1	100%	1
4Y28_CLA_A_1118	22%	4%	0.225	0.893	2.86	2.91	18	20	3	1	71%	0.7077
4Y28_CLA_4_4017	22%	7%	0.268	0.884	2.21	2.6	19	25	10	1	100%	1
4Y28_CLA_A_1112	21%	7%	0.25	0.863	2.36	2.54	20	22	8	1	100%	1
4Y28_CLA_A_1104	21%	6%	0.282	0.892	2.37	2.61	20	22	3	1	100%	1
4Y28_CLA_B_1215	20%	6%	0.303	0.924	2.5	2.68	20	22	0	1	92%	0.9231
4Y28_CLA_F_1301	20%	4%	0.23	0.89	2.64	2.91	17	18	3	1	69%	0.6923
4Y28_CLA_L_1501	20%	4%	0.217	0.861	2.57	2.94	18	25	11	1	77%	0.7692
4Y28_CLA_B_1228	20%	6%	0.256	0.873	2.48	2.65	19	22	1	1	92%	0.9231
4Y28_CLA_2_2006	20%	5%	0.227	0.856	2.49	2.8	18	22	17	1	85%	0.8462
4Y28_CLA_B_1217	19%	4%	0.271	0.922	2.88	2.84	20	19	1	1	71%	0.7077
4Y28_CLA_3_3002	19%	4%	0.241	0.886	2.68	3.03	20	25	4	1	71%	0.7077
4Y28_CLA_3_3005	19%	5%	0.247	0.867	2.45	2.89	19	24	13	1	85%	0.8462
4Y28_CLA_A_1135	19%	4%	0.275	0.907	2.68	2.93	19	22	4	1	78%	0.7846
4Y28_CLA_A_1105	18%	4%	0.249	0.878	2.7	2.89	20	25	1	1	78%	0.7846
4Y28_CLA_3_3012	18%	4%	0.223	0.853	2.5	3.08	19	23	28	1	77%	0.7692
4Y28_CLA_G_1003	18%	6%	0.242	0.842	2.35	2.74	19	25	21	1	92%	0.9231
4Y28_CLA_2_2001	18%	6%	0.287	0.887	2.29	2.81	19	27	26	1	92%	0.9231
4Y28_CLA_A_1151	18%	4%	0.24	0.866	2.76	2.9	20	20	3	1	77%	0.7692
4Y28_CLA_3_3017	18%	4%	0.242	0.879	2.73	2.84	18	21	5	1	71%	0.7077
4Y28_CLA_A_1127	17%	7%	0.332	0.916	2.39	2.53	19	22	5	1	100%	1
4Y28_CLA_A_1115	17%	4%	0.242	0.874	2.89	2.79	20	19	3	1	71%	0.7077
4Y28_CLA_2_2012	17%	5%	0.292	0.896	2.39	2.85	18	23	21	1	85%	0.8462
4Y28_CLA_A_1110	16%	5%	0.272	0.868	2.6	2.73	20	23	7	1	85%	0.8462
4Y28_CLA_A_1107	15%	6%	0.295	0.861	2.38	2.58	20	23	3	1	100%	1
4Y28_CLA_A_1117	15%	7%	0.365	0.929	2.38	2.54	19	22	3	1	100%	1
4Y28_CLA_A_1134	15%	5%	0.274	0.861	2.59	2.78	19	22	1	1	85%	0.8462
4Y28_CLA_A_1108	14%	4%	0.294	0.905	2.9	2.84	20	21	3	1	71%	0.7077
4Y28_CLA_2_2002	14%	4%	0.209	0.817	2.65	2.99	19	24	21	1	71%	0.7077
4Y28_CLA_4_4001	14%	6%	0.274	0.84	2.3	2.76	19	26	20	1	92%	0.9231
4Y28_CLA_A_1123	14%	6%	0.312	0.865	2.39	2.59	20	23	4	1	100%	1
4Y28_CLA_B_1222	14%	6%	0.303	0.855	2.36	2.64	19	25	5	1	100%	1
4Y28_CLA_4_4008	13%	3%	0.254	0.853	2.6	3.32	18	26	8	1	71%	0.7077
4Y28_CLA_B_1212	13%	5%	0.264	0.838	2.57	2.83	20	23	5	1	85%	0.8462
4Y28_CLA_1_1006	13%	4%	0.244	0.831	2.59	2.95	21	23	10	1	77%	0.7692
4Y28_CLA_A_1114	13%	4%	0.29	0.889	2.89	2.86	19	20	2	1	71%	0.7077
4Y28_CLA_4_4007	13%	6%	0.295	0.852	2.27	2.88	17	23	7	1	92%	0.9231
4Y28_CLA_3_3003	13%	6%	0.248	0.803	2.36	2.73	19	24	31	1	92%	0.9231
4Y28_CLA_B_1234	13%	5%	0.296	0.852	2.49	2.72	20	24	7	1	92%	0.9231
4Y28_CLA_3_3007	13%	4%	0.233	0.812	2.58	2.93	20	24	6	1	77%	0.7692
4Y28_CLA_3_3004	13%	6%	0.262	0.813	2.32	2.67	19	20	14	1	92%	0.9231
4Y28_CLA_4_4002	12%	4%	0.245	0.817	2.56	2.97	17	26	5	1	77%	0.7692
4Y28_CLA_A_1113	12%	4%	0.273	0.855	2.87	2.83	19	21	2	1	71%	0.7077
4Y28_CLA_B_1214	12%	5%	0.299	0.843	2.5	2.73	19	23	1	1	91%	0.9077
4Y28_CLA_3_3006	11%	4%	0.252	0.817	2.57	2.97	20	24	28	1	77%	0.7692
4Y28_CLA_1_1011	11%	5%	0.286	0.849	2.52	2.93	18	24	11	1	77%	0.7692
4Y28_CLA_2_2007	11%	6%	0.301	0.835	2.37	2.67	19	22	20	1	92%	0.9231
4Y28_CLA_4_4006	11%	5%	0.242	0.8	2.51	2.85	18	23	21	1	77%	0.7692
4Y28_CLA_3_3001	11%	4%	0.311	0.868	2.56	2.97	19	21	23	1	77%	0.7692
4Y28_CLA_3_3010	10%	6%	0.292	0.817	2.34	2.78	18	23	22	1	92%	0.9231
4Y28_CLA_1_1008	9%	4%	0.249	0.797	2.67	2.98	18	24	25	1	71%	0.7077
4Y28_CLA_2_2019	9%	2%	0.18	0.771	3.22	3.34	14	16	0	1	42%	0.412
4Y28_CLA_H_1000	9%	4%	0.308	0.85	2.88	2.84	19	19	4	1	71%	0.7077
4Y28_CLA_3_3018	7%	4%	0.313	0.807	2.57	3.03	21	25	14	1	77%	0.7692
4Y28_CLA_J_1302	6%	4%	0.354	0.841	2.73	2.96	20	23	7	1	77%	0.7692
4Y28_CLA_4_4016	6%	4%	0.299	0.791	2.76	2.93	18	23	18	1	71%	0.7077
4Y28_CLA_L_1503	5%	4%	0.374	0.831	2.56	2.97	18	22	11	1	77%	0.7692
4Y28_CLA_K_1001	5%	4%	0.346	0.796	2.73	3.1	19	20	6	1	71%	0.7077
4Y28_CLA_1_1013	4%	4%	0.339	0.767	2.74	2.98	20	19	15	1	71%	0.7077
4Y28_CLA_2_2016	3%	3%	0.304	0.666	2.62	3.57	18	29	19	1	77%	0.7692
4Y28_CLA_3_3008	3%	3%	0.463	0.835	2.54	3.48	18	27	9	1	74%	0.7385
4Y28_CLA_3_3019	0%	2%	0.594	0.294	3.33	3.29	15	15	1	1	42%	0.412
5L8R_CLA_B_832	74%	20%	0.122	0.971	1.38	1.98	6	15	6	1	89%	0.8923
7DKZ_CLA_A_808	72%	27%	0.153	0.977	1.36	1.59	8	11	4	1	100%	1
4XK8_CLA_b_839	59%	7%	0.179	0.963	2.1	2.71	16	23	0	1	100%	1
6ZXS_CLA_1_5012	58%	15%	0.12	0.952	1.62	2.11	9	13	2	1	71%	0.7077
4RKU_CLA_B_9010	53%	6%	0.194	0.956	2.3	2.72	18	26	14	1	100%	1
5V2C_CLA_B_604	99%	14%	0.049	0.986	1.64	2.25	13	20	0	1	100%	1
7YQ7_CLA_D_401	98%	8%	0.059	0.979	2.09	2.56	19	28	0	0	100%	1
5B66_CLA_D_402	98%	11%	0.061	0.981	1.9	2.23	16	21	0	0	100%	1
8OV5_CLA_O_601	97%	33%	0.065	0.983	1.45	1.23	8	4	0	0	100%	1
5ZZN_CLA_A_406	97%	15%	0.064	0.979	1.65	2.13	17	21	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM133198.

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4Y28

CLA: CHLOROPHYLL A

CLA is a Ligand Of Interest in 4Y28 designated by the RCSB