DUP: 2'-DEOXYURIDINE 5'-ALPHA,BETA-IMIDO-TRIPHOSPHATE
DUP is a Ligand Of Interest in 4YD1 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 4YD1_DUP_A_607 | 99% | 33% | 0.051 | 0.991 | 1.3 | 1.33 | 4 | 5 | 0 | 0 | 100% | 1 |
| 4M04_DUP_A_701 | 99% | 38% | 0.06 | 0.987 | 1.44 | 0.98 | 5 | 1 | 0 | 0 | 100% | 1 |
| 6AKH_DUP_A_505 | 94% | 21% | 0.089 | 0.988 | 1.84 | 1.47 | 4 | 4 | 0 | 0 | 100% | 1 |
| 6WIC_DUP_A_701 | 87% | 24% | 0.117 | 0.99 | 1.45 | 1.68 | 4 | 10 | 0 | 0 | 100% | 1 |
| 6WID_DUP_A_701 | 82% | 26% | 0.112 | 0.969 | 1.31 | 1.69 | 3 | 7 | 0 | 0 | 100% | 0.6 |
| 3LOJ_DUP_A_201 | 100% | 17% | 0.029 | 0.995 | 2.23 | 1.42 | 9 | 4 | 2 | 0 | 100% | 1 |
| 3HZA_DUP_A_201 | 100% | 20% | 0.036 | 0.995 | 2.01 | 1.4 | 6 | 8 | 1 | 0 | 100% | 1 |
| 5ECT_DUP_A_201 | 100% | 24% | 0.04 | 0.994 | 1.82 | 1.3 | 7 | 4 | 1 | 0 | 100% | 1 |
| 3EHW_DUP_Y_777 | 100% | 23% | 0.039 | 0.991 | 1.74 | 1.47 | 6 | 4 | 4 | 0 | 100% | 1 |
| 1SIX_DUP_A_170 | 100% | 16% | 0.046 | 0.995 | 2.25 | 1.49 | 7 | 4 | 0 | 0 | 100% | 1 |
