VDM: (1S,2S,3R,6S)-4-(HYDROXYMETHYL)-6-{[(1S,2S,3S,4R,5R)-2,3,4-TRIHYDROXY-5-(HYDROXYMETHYL)CYCLOHEXYL]AMINO}CYCLOHEX-4-ENE-1,2,3-TRIOL
VDM is a Ligand Of Interest in 5HVO designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5HVO_VDM_C_502 | 68% | 7% | 0.117 | 0.928 | 1.96 | 2.75 | 5 | 8 | 2 | 0 | 100% | 1 |
| 5HVO_VDM_B_502 | 66% | 7% | 0.121 | 0.926 | 2.06 | 2.8 | 4 | 8 | 1 | 0 | 100% | 1 |
| 5HVO_VDM_D_502 | 50% | 8% | 0.154 | 0.905 | 1.93 | 2.76 | 4 | 9 | 1 | 0 | 100% | 1 |
| 5HVO_VDM_A_502 | 44% | 6% | 0.171 | 0.897 | 2.09 | 2.97 | 5 | 8 | 2 | 0 | 100% | 1 |
| 8Z2U_VDM_A_603 | 100% | 46% | 0.022 | 0.997 | 0.78 | 1.29 | 2 | 2 | 0 | 0 | 100% | 1 |
| 2JF4_VDM_A_1548 | 98% | 34% | 0.047 | 0.969 | 0.82 | 1.78 | 1 | 4 | 1 | 0 | 100% | 1 |
| 8Z2T_VDM_A_603 | 92% | 22% | 0.069 | 0.958 | 0.59 | 2.61 | - | 5 | 1 | 0 | 100% | 1 |
| 5HVL_VDM_B_502 | 83% | 11% | 0.086 | 0.945 | 1.87 | 2.29 | 3 | 5 | 0 | 0 | 100% | 1 |
| 5Z66_VDM_A_609 | 82% | 31% | 0.106 | 0.96 | 0.98 | 1.73 | 2 | 2 | 1 | 0 | 100% | 1 |
