RET: RETINAL
RET is a Ligand Of Interest in 5JJF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5JJF_RET_A_301 | 29% | 7% | 0.251 | 0.912 | 1.74 | 2.98 | 4 | 13 | 0 | 0 | 100% | 0.4762 |
7PNC_RET_A_301 | 95% | 72% | 0.055 | 0.958 | 0.76 | 0.35 | 1 | - | 0 | 0 | 100% | 0.9524 |
3QAP_RET_A_240 | 84% | 9% | 0.097 | 0.966 | 2.61 | 1.82 | 13 | 9 | 1 | 0 | 95% | 0.9524 |
4GYC_RET_A_301 | 77% | 13% | 0.121 | 0.96 | 2.08 | 1.93 | 6 | 7 | 1 | 0 | 100% | 0.9524 |
1H68_RET_A_300 | 71% | 31% | 0.139 | 0.96 | 1.61 | 1.14 | 4 | 4 | 0 | 0 | 100% | 0.9524 |
8QQO_RET_A_300 | 70% | 47% | 0.143 | 0.962 | 1.16 | 0.88 | 2 | - | 1 | 0 | 100% | 0.7524 |
4OV0_RET_A_301 | 100% | 8% | 0.027 | 0.992 | 0.76 | 3.77 | - | 15 | 4 | 0 | 100% | 0.9524 |
3UTY_RET_A_301 | 100% | 5% | 0.028 | 0.992 | 2.48 | 2.7 | 6 | 12 | 2 | 0 | 100% | 0.9524 |
3UTX_RET_B_301 | 100% | 6% | 0.042 | 0.988 | 2.42 | 2.7 | 5 | 12 | 4 | 0 | 100% | 0.9524 |
7XJE_RET_A_301 | 99% | 6% | 0.048 | 0.983 | 1.99 | 2.98 | 4 | 14 | 1 | 0 | 100% | 0.9524 |
5G28_RET_A_1268 | 97% | 23% | 0.051 | 0.968 | 1.29 | 1.84 | 3 | 5 | 0 | 0 | 100% | 0.9524 |