DGD: DIGALACTOSYL DIACYL GLYCEROL (DGDG)
DGD is a Ligand Of Interest in 5KAF designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5KAF_DGD_C_516 | 36% | 41% | 0.211 | 0.914 | 0.86 | 1.43 | 2 | 9 | 0 | 0 | 94% | 0.9394 |
5KAF_DGD_C_517 | 35% | 42% | 0.217 | 0.915 | 0.9 | 1.36 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5KAF_DGD_c_518 | 34% | 41% | 0.208 | 0.903 | 0.86 | 1.42 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5KAF_DGD_C_518 | 23% | 41% | 0.25 | 0.884 | 0.87 | 1.4 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5KAF_DGD_c_519 | 19% | 41% | 0.263 | 0.869 | 0.89 | 1.38 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
5KAF_DGD_c_520 | 19% | 41% | 0.266 | 0.871 | 0.87 | 1.4 | 2 | 10 | 0 | 0 | 94% | 0.9394 |
5KAF_DGD_H_103 | 16% | 43% | 0.268 | 0.848 | 0.87 | 1.34 | 1 | 7 | 0 | 0 | 94% | 0.9394 |
5KAF_DGD_h_102 | 11% | 43% | 0.295 | 0.824 | 0.87 | 1.32 | 1 | 8 | 0 | 0 | 94% | 0.9394 |
5GTI_DGD_h_103 | 96% | 52% | 0.05 | 0.967 | 0.89 | 0.96 | 3 | 3 | 0 | 0 | 94% | 0.9394 |
5V2C_DGD_C_516 | 95% | 43% | 0.067 | 0.983 | 0.89 | 1.29 | 5 | 10 | 0 | 0 | 94% | 0.9394 |
7YQ7_DGD_C_518 | 87% | 51% | 0.084 | 0.967 | 0.83 | 1.07 | 3 | 5 | 0 | 0 | 94% | 0.9394 |
8IR5_DGD_C_515 | 86% | 47% | 0.092 | 0.97 | 0.81 | 1.21 | 2 | 8 | 0 | 0 | 94% | 0.9394 |
8IRC_DGD_C_517 | 85% | 47% | 0.096 | 0.973 | 0.83 | 1.2 | 2 | 8 | 0 | 0 | 94% | 0.9394 |