5KY2 | pdb_00005ky2


GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 5KY2 designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5KY2_GDP_A_403Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5KY2_GDP_A_403Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5KY2_GDP_A_403Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5KY2_GDP_A_403 100% 48% 0.036 0.9890.98 1.04 1 100100%1
5KY0_GDP_A_403 100% 44% 0.04 0.9861.15 1.04 2 200100%1
5KXQ_GDP_D_403 100% 47% 0.041 0.9860.99 1.06 - 200100%1
5KY4_GDP_A_403 99% 45% 0.046 0.9831.02 1.09 2 200100%1
5KXH_GDP_A_403 98% 51% 0.065 0.9840.89 1 1 200100%1
5KY5_GDP_A_403 94% 41% 0.067 0.9640.98 1.31 1 500100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
9BL0_GDP_A_201 100% 46% 0.016 0.9980.96 1.11 1 210100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
9BAJ_GDP_A_203 100% 41% 0.032 0.9941.22 1.1 2 210100%1