Ligand validation:5VYS

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 5VYS designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5VYS_GDP_B_302	70%	40%	0.114	0.932	0.96	1.35	1	4	0	0	100%	1
5VYS_GDP_A_303	43%	35%	0.152	0.875	1.07	1.46	2	5	0	0	100%	1
5VYT_GDP_D_302	77%	42%	0.1	0.938	0.92	1.3	1	4	0	0	100%	1
5VYU_GDP_B_302	38%	35%	0.157	0.859	1.05	1.5	1	4	0	0	100%	1
1RRG_GDP_A_183	100%	17%	0.036	0.997	2.05	1.56	7	3	0	0	100%	1
2CXX_GDP_B_2401	100%	29%	0.031	0.989	1.26	1.57	1	3	0	0	100%	1
4LUC_GDP_A_204	100%	40%	0.036	0.992	1.22	1.11	2	2	0	0	100%	1
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
8YL3_GDP_A_201	100%	57%	0.035	0.99	0.89	0.75	2	-	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.