Ligand validation:5Y5S

PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE

PGV is a Ligand Of Interest in 5Y5S designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5Y5S_PGV_M_413	40%	48%	0.162	0.891	1.06	0.97	2	4	3	0	90%	0.902
5Y5S_PGV_H_303	34%	39%	0.195	0.931	1.1	1.27	2	4	1	0	71%	0.7059
5Y5S_PGV_M_414	31%	41%	0.168	0.883	1.07	1.21	2	3	3	0	73%	0.7255
5Y5S_PGV_D_104	24%	41%	0.188	0.876	1.07	1.2	2	5	2	0	69%	0.6863
5Y5S_PGV_A_105	21%	40%	0.224	0.894	1.18	1.18	2	3	5	0	65%	0.6471
5Y5S_PGV_L_306	18%	45%	0.22	0.829	0.99	1.12	2	2	3	0	86%	0.8627
5Y5S_PGV_1_105	16%	39%	0.185	0.823	1.21	1.18	2	3	0	0	61%	0.6078
5Y5S_PGV_L_305	14%	41%	0.225	0.8	1.04	1.26	2	3	3	0	84%	0.8431
5Y5S_PGV_C_509	3%	26%	0.267	0.685	1.44	1.58	3	3	0	0	41%	0.4118
5Y5S_PGV_3_104	1%	52%	0.392	0.477	0.94	0.92	2	2	3	0	100%	1
7C52_PGV_H_303	17%	41%	0.275	0.908	1.1	1.19	2	4	2	0	71%	0.7059
5B1A_PGV_P_303	98%	35%	0.064	0.985	1.06	1.51	3	13	4	0	100%	1
5X1B_PGV_C_302	95%	52%	0.078	0.981	0.92	0.93	2	4	0	0	100%	1
5B1B_PGV_C_302	94%	56%	0.078	0.979	0.81	0.87	1	1	3	0	100%	1
7YPY_PGV_P_302	94%	54%	0.079	0.978	0.79	0.99	2	2	1	0	100%	1
7COH_PGV_C_267	93%	49%	0.087	0.983	0.87	1.09	3	3	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.