PGV: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE

PGV is a Ligand Of Interest in 5Y5S designated by the RCSB


Best-fitted instance in this entry
Other instances in this entry
Best-fitted instance in this entry
Best-fitted PDB instances with same target (top 5)
Best-fitted instance in this entry
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5Y5S_PGV_M_413 40% 48% 0.162 0.8911.06 0.97 2 43090%0.902
5Y5S_PGV_H_303 34% 39% 0.195 0.9311.1 1.27 2 41071%0.7059
5Y5S_PGV_M_414 31% 41% 0.168 0.8831.07 1.21 2 33073%0.7255
5Y5S_PGV_D_104 24% 41% 0.188 0.8761.07 1.2 2 52069%0.6863
5Y5S_PGV_A_105 21% 40% 0.224 0.8941.18 1.18 2 35065%0.6471
5Y5S_PGV_L_306 18% 45% 0.22 0.8290.99 1.12 2 23086%0.8627
5Y5S_PGV_1_105 16% 39% 0.185 0.8231.21 1.18 2 30061%0.6078
5Y5S_PGV_L_305 14% 41% 0.225 0.81.04 1.26 2 33084%0.8431
5Y5S_PGV_C_509 3% 26% 0.267 0.6851.44 1.58 3 30041%0.4118
5Y5S_PGV_3_104 1% 52% 0.392 0.477 0.94 0.92 2 230100%1
7C52_PGV_H_303 17% 41% 0.275 0.9081.1 1.19 2 42071%0.7059
5B1A_PGV_P_303 98% 35% 0.064 0.9851.06 1.51 3 1340100%1
5X1B_PGV_C_302 95% 52% 0.078 0.9810.92 0.93 2 400100%1
5B1B_PGV_C_302 94% 56% 0.078 0.9790.81 0.87 1 130100%1
7YPY_PGV_P_302 94% 54% 0.079 0.9780.79 0.99 2 210100%1
7COH_PGV_C_267 93% 49% 0.087 0.9830.87 1.09 3 300100%1