GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5YMX designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
5YMX_GDP_B_301 | 95% | 51% | 0.073 | 0.975 | 0.9 | 1 | 1 | 2 | 2 | 0 | 100% | 1 |
6HJO_GDP_B_200 | 89% | 60% | 0.095 | 0.974 | 0.88 | 0.66 | 1 | - | 0 | 0 | 100% | 1 |
6H35_GDP_A_301 | 79% | 44% | 0.132 | 0.977 | 1.04 | 1.13 | 2 | 2 | 0 | 0 | 100% | 1 |
6HJH_GDP_A_200 | 59% | 59% | 0.187 | 0.972 | 0.88 | 0.71 | 2 | - | 0 | 0 | 100% | 1 |
1RRG_GDP_A_183 | 100% | 17% | 0.036 | 0.997 | 2.05 | 1.56 | 7 | 3 | 0 | 0 | 100% | 1 |
5KY2_GDP_A_403 | 100% | 48% | 0.036 | 0.989 | 0.98 | 1.04 | 1 | 1 | 0 | 0 | 100% | 1 |
8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
5UQW_GDP_A_1002 | 100% | 47% | 0.04 | 0.99 | 1.04 | 1.01 | 2 | 2 | 0 | 0 | 100% | 1 |
2PHN_GDP_A_2696 | 100% | 44% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |