5YMX | pdb_00005ymx


GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 5YMX designated by the RCSB
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Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YMX_GDP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YMX_GDP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0WorseGeometryBetterWorseExperiment Data FittingBetter5YMX_GDP_A_301Click to see a 3Delectron density viewof this ligand instance
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Other instances in this entry
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with same target (top 5)
Created with Raphaël 2.3.0
Best-fitted instance in this entry
Created with Raphaël 2.3.0
Best-fitted PDB instances with different target (top 5)
IdentifierRanking for goodness of fit Ranking for geometry Real space R factor Real space correlation coefficient RMSZ-bond-length RMSZ-bond-angleOutliers of bond length Outliers of bond angle Atomic clashesStereochemical errorsModel completenessAverage occupancy
5YMX_GDP_A_301 100% 54% 0.038 0.9940.92 0.85 1 -20100%1
5YMX_GDP_B_301 95% 51% 0.073 0.9750.9 1 1 220100%1
6HJO_GDP_B_200 89% 60% 0.095 0.9740.88 0.66 1 -00100%1
6H35_GDP_A_301 79% 44% 0.132 0.9771.04 1.13 2 200100%1
6HJH_GDP_A_200 59% 59% 0.187 0.9720.88 0.71 2 -00100%1
1TVK_GDP_B_1500 100% 23% 0.012 0.9992.28 0.95 3 280100%1
9BL0_GDP_A_201 100% 46% 0.016 0.9980.96 1.11 1 210100%1
8QEG_GDP_A_401 100% 51% 0.031 0.9931.02 0.87 3 100100%1
8QEH_GDP_A_405 100% 55% 0.03 0.9930.89 0.85 1 100100%1
9BAJ_GDP_A_203 100% 41% 0.032 0.9941.22 1.1 2 210100%1