GDP: GUANOSINE-5'-DIPHOSPHATE
GDP is a Ligand Of Interest in 5YMX designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
| Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
|---|
| 5YMX_GDP_A_301 | 100% | 54% | 0.038 | 0.994 | 0.92 | 0.85 | 1 | - | 2 | 0 | 100% | 1 |
| 5YMX_GDP_B_301 | 95% | 51% | 0.073 | 0.975 | 0.9 | 1 | 1 | 2 | 2 | 0 | 100% | 1 |
| 6HJO_GDP_B_200 | 89% | 26% | 0.095 | 0.974 | 1.07 | 2.06 | 1 | 5 | 0 | 0 | 100% | 1 |
| 6H35_GDP_A_301 | 78% | 27% | 0.132 | 0.977 | 1.2 | 1.9 | 2 | 7 | 0 | 0 | 100% | 1 |
| 6HJH_GDP_A_200 | 59% | 27% | 0.187 | 0.972 | 0.96 | 2.09 | 1 | 5 | 0 | 0 | 100% | 1 |
| 1RRG_GDP_A_183 | 100% | 10% | 0.036 | 0.997 | 1.96 | 2.53 | 6 | 8 | 0 | 0 | 100% | 1 |
| 8CNJ_GDP_B_201 | 100% | 56% | 0.04 | 0.992 | 0.91 | 0.77 | 1 | - | 0 | 0 | 100% | 1 |
| 5UQW_GDP_A_1002 | 100% | 23% | 0.04 | 0.99 | 1.16 | 2.16 | 1 | 3 | 0 | 0 | 100% | 1 |
| 2PHN_GDP_A_2696 | 100% | 45% | 0.046 | 0.99 | 1.08 | 1.08 | 1 | 2 | 0 | 0 | 100% | 1 |
| 6TAN_GDP_A_201 | 100% | 29% | 0.046 | 0.99 | 0.87 | 2.09 | - | 4 | 0 | 0 | 100% | 1 |
