Ligand validation:5YMX

GDP: GUANOSINE-5'-DIPHOSPHATE

GDP is a Ligand Of Interest in 5YMX designated by the RCSB

	Best-fitted instance in this entry
	Other instances in this entry

	Best-fitted instance in this entry
	Best-fitted PDB instances with same target (top 5)

	Best-fitted instance in this entry
	Best-fitted PDB instances with different target (top 5)

Identifier	Ranking for goodness of fit	Ranking for geometry	Real space R factor	Real space correlation coefficient	RMSZ-bond-length	RMSZ-bond-angle	Outliers of bond length	Outliers of bond angle	Atomic clashes	Stereochemical errors	Model completeness	Average occupancy
5YMX_GDP_A_301	100%	54%	0.038	0.994	0.92	0.85	1	-	2	0	100%	1
5YMX_GDP_B_301	95%	51%	0.073	0.975	0.9	1	1	2	2	0	100%	1
6HJO_GDP_B_200	89%	60%	0.095	0.974	0.88	0.66	1	-	0	0	100%	1
6H35_GDP_A_301	79%	44%	0.132	0.977	1.04	1.13	2	2	0	0	100%	1
6HJH_GDP_A_200	59%	59%	0.187	0.972	0.88	0.71	2	-	0	0	100%	1
1TVK_GDP_B_1500	100%	23%	0.012	0.999	2.28	0.95	3	2	8	0	100%	1
9BL0_GDP_A_201	100%	46%	0.016	0.998	0.96	1.11	1	2	1	0	100%	1
9C3K_GDP_A_201	100%	39%	0.016	0.998	1.17	1.21	1	2	1	0	100%	1
9C3L_GDP_A_201	100%	49%	0.021	0.997	0.91	1.04	1	1	0	0	100%	1
9C3N_GDP_A_202	100%	38%	0.017	0.998	1.36	1.06	3	1	0	0	100%	1

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.