UDX: URIDINE-5'-DIPHOSPHATE-XYLOPYRANOSE
UDX is a Ligand Of Interest in 6C58 designated by the RCSB
| Best-fitted instance in this entry |
| Other instances in this entry |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with same target (top 5) |
| Best-fitted instance in this entry |
| Best-fitted PDB instances with different target (top 5) |
Identifier | Ranking for goodness of fit | Ranking for geometry | Real space R factor | Real space correlation coefficient | RMSZ-bond-length | RMSZ-bond-angle | Outliers of bond length | Outliers of bond angle | Atomic clashes | Stereochemical errors | Model completeness | Average occupancy |
6C58_UDX_A_501 | 84% | 55% | 0.109 | 0.972 | 0.72 | 1.01 | - | 3 | 0 | 0 | 100% | 1 |
6C58_UDX_D_501 | 81% | 58% | 0.116 | 0.968 | 0.7 | 0.89 | - | 1 | 0 | 0 | 100% | 1 |
6C58_UDX_A_502 | 79% | 59% | 0.127 | 0.974 | 0.72 | 0.85 | - | 1 | 1 | 0 | 100% | 1 |
6C58_UDX_C_500 | 77% | 57% | 0.135 | 0.974 | 0.71 | 0.94 | - | 2 | 0 | 0 | 100% | 1 |
6C58_UDX_E_501 | 77% | 58% | 0.137 | 0.976 | 0.7 | 0.91 | - | 1 | 0 | 0 | 100% | 1 |
6C58_UDX_C_501 | 75% | 59% | 0.135 | 0.969 | 0.72 | 0.85 | - | 1 | 0 | 0 | 100% | 1 |
6C58_UDX_B_501 | 72% | 56% | 0.144 | 0.969 | 0.71 | 0.97 | - | 2 | 0 | 0 | 100% | 1 |
6C58_UDX_B_502 | 71% | 59% | 0.144 | 0.964 | 0.72 | 0.85 | - | 1 | 0 | 0 | 100% | 1 |
6C58_UDX_F_501 | 65% | 58% | 0.155 | 0.958 | 0.71 | 0.89 | - | 2 | 0 | 0 | 100% | 1 |
6C58_UDX_F_500 | 58% | 54% | 0.159 | 0.937 | 0.72 | 1.05 | - | 3 | 0 | 0 | 100% | 1 |
5VR8_UDX_B_502 | 93% | 38% | 0.091 | 0.987 | 0.98 | 1.45 | 1 | 7 | 0 | 0 | 100% | 1 |
3PTZ_UDX_A_501 | 89% | 22% | 0.109 | 0.99 | 1.2 | 2.02 | 4 | 13 | 0 | 0 | 100% | 1 |
3PRJ_UDX_E_501 | 74% | 23% | 0.153 | 0.984 | 0.83 | 2.31 | - | 14 | 0 | 0 | 100% | 1 |
4WNH_UDX_A_402 | 84% | 34% | 0.093 | 0.954 | 1.03 | 1.55 | 3 | 8 | 0 | 0 | 100% | 0.9 |
6OM8_UDX_J_501 | 78% | 39% | 0.133 | 0.976 | 0.97 | 1.42 | 3 | 6 | 0 | 0 | 100% | 1 |