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Register Now for Virtual Crash Course: Understanding PDBx/mmCIF

04/02 PDB101 News

Register  for <I>Virtual Crash Course: Use PDB data to their full extent:  Understanding 
PDBx/mmCIF </I>Register for Virtual Crash Course: Use PDB data to their full extent: Understanding PDBx/mmCIF

Professionals and graduate students (structural biology, cheminformatics & computational chemistry, bioinformatics & computational biology) interested in learning about strategies to take full advantage of PDB data should attend.

Understand the basics of PDBx/mmCIF data dictionary and file format that underpin archiving of more than 200,000 experimentally determined 3D biostructures in the PDB. Learn about software tools for generating and working with PDBx/mmCIF files, and programmatic access for harvesting PDB data on Wednesday May 3, 2023 (1:00 - 5:00 pm EDT).

Registration is required for the Zoom meeting information, but attendance is at no charge.
Please sign up at https://go.rutgers.edu/u3vpwjet.


1:00–1:10 PM

Welcome and Introduction
Stephen K. Burley, M.D., D.Phil., Director, RCSB PDB

1:10–1:25 PM

Introduction and course objectives
Gregg Crichlow, Ph.D., RCSB PDB, Rutgers University

1:25–1:45 PM

PDBx/mmCIF format - Not your parents’ legacy PDB format
Ezra Peisach, Ph.D., RCSB PDB, Rutgers University

1:45–2:05 PM

PDBx/mmCIF data files - Lifting the lid off the black box
Brian Hudson, Ph.D., RCSB PDB, Rutgers University

2:05-2:50 PM

Programmatic data access and analysis using PDBx/mmCIF files
Irina Persikova, Ph.D. and Chenghua Shao, Ph.D. RCSB PDB, Rutgers University

2:50-3:00 PM

Closing remarks and acknowledgements
Stephen K. Burley

Co-organizers

RCSB PDB Biocurators: Gregg Crichlow, Justin Flatt, Sutapa Ghosh, Brian Hudson, Yuhe Liang, Ezra Peisach, Irina Persikova, Monica Sekharan, Chenghua Shao, Jasmine Young (Rutgers, The State University of New Jersey)

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Development and management of the PDBx/mmCIF data dictionary is a collaborative effort involving RCSB PDB, Worldwide Protein Data Bank (wwPDB) partners, and members of the wwPDB PDBx/mmCIF Working Group.

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