RCSB PDB: Search

6Y0H \| pdb_00006y0h	Download File View File

High resolution structure of GH11 xylanase from Nectria haematococca

Andaleeb, H., Betzel, C., Perbandt, M., Brognaro, H.

(2020) Sci Rep 10: 15658-15658

Released	2020-10-14
Method	X-RAY DIFFRACTION 1 Å
Organisms	Fusarium vanettenii 77-13-4
Macromolecule	Endo-1,4-beta-xylanase (protein)

Explore in 3D

7A1U \| pdb_00007a1u	Download File View File

Structure of SARS-CoV-2 Main Protease bound to Fusidic Acid.

Guenther, S., Reinke, P., Oberthuer, D., Yefanov, O., Gelisio, L., Ginn, H., Lieske, J., Domaracky, M., Brehm, W., Rahmani Mashour, A., White, T.A., Knoska, J., Pena Esperanza, G., Koua, F., Tolstikova, A., Groessler, M., Fischer, P., Hennicke, V., Fleckenstein, H., Trost, F., Galchenkova, M., Gevorkov, Y., Li, C., Awel, S., Paulraj, L.X., Ullah, N., Andaleeb, H., Werner, N., Falke, S., Alves Franca, B., Schwinzer, M., Brognaro, H., Perbandt, M., Tidow, H., Seychell, B., Beck, T., Meier, S., Doyle, J.J., Giseler, H., Melo, D., Dunkel, I., Lane, T.J., Peck, A., Saouane, S., Hakanpaeae, J., Meyer, J., Noei, H., Gribbon, P., Ellinger, B., Kuzikov, M., Wolf, M., Zhang, L., Ehrt, C., Pletzer-Zelgert, J., Wollenhaupt, J., Feiler, C., Weiss, M., Schulz, E.C., Mehrabi, P., Norton-Baker, B., Schmidt, C., Lorenzen, K., Schubert, R., Han, H., Chari, A., Fernandez Garcia, Y., Turk, D., Hilgenfeld, R., Rarey, M., Zaliani, A., Chapman, H.N., Pearson, A., Betzel, C., Meents, A.

(2021) Science 372: 642-646

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS, FUA, IMD

Explore in 3D

7AGA \| pdb_00007aga	Download File View File

Structure of SARS-CoV-2 Main Protease bound to AT7519

Guenther, S., Reinke, P., Oberthuer, D., Yefanov, O., Gelisio, L., Ginn, H., Lieske, J., Domaracky, M., Brehm, W., Rahmani Mashour, A., White, T.A., Knoska, J., Pena Esperanza, G., Koua, F., Tolstikova, A., Groessler, M., Fischer, P., Hennicke, V., Fleckenstein, H., Trost, F., Galchenkova, M., Gevorkov, Y., Li, C., Awel, S., Paulraj, L.X., Ullah, N., Andaleeb, H., Werner, N., Falke, S., Hinrichs, W., Alves Franca, B., Schwinzer, M., Brognaro, H., Perbandt, M., Tidow, H., Seychell, B., Beck, T., Meier, S., Doyle, J.J., Giseler, H., Melo, D., Dunkel, I., Lane, T.J., Peck, A., Saouane, S., Hakanpaeae, J., Meyer, J., Noei, H., Boger, J., Gribbon, P., Ellinger, B., Kuzikov, M., Wolf, M., Zhang, L., Ehrt, C., Pletzer-Zelgert, J., Wollenhaupt, J., Feiler, C., Weiss, M., Schulz, E.C., Mehrabi, P., Norton-Baker, B., Schmidt, C., Lorenzen, K., Schubert, R., Han, H., Chari, A., Fernandez Garcia, Y., Turk, D., Hilgenfeld, R., Rarey, M., Zaliani, A., Chapman, H.N., Pearson, A., Betzel, C., Meents, A.

(2021) Science 372: 642-646

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	CL, DMS, LZE

Explore in 3D

7AHA \| pdb_00007aha	Download File View File

Structure of SARS-CoV-2 Main Protease bound to Maleate.

Guenther, S., Reinke, P., Oberthuer, D., Yefanov, O., Gelisio, L., Ginn, H., Lieske, J., Domaracky, M., Brehm, W., Rahmani Mashour, A., White, T.A., Knoska, J., Pena Esperanza, G., Koua, F., Tolstikova, A., Groessler, M., Fischer, P., Hennicke, V., Fleckenstein, H., Trost, F., Galchenkova, M., Gevorkov, Y., Li, C., Awel, S., Paulraj, L.X., Ullah, N., Andaleeb, H., Werner, N., Falke, S., Hinrichs, W., Alves Franca, B., Schwinzer, M., Brognaro, H., Perbandt, M., Tidow, H., Seychell, B., Beck, T., Meier, S., Doyle, J.J., Giseler, H., Melo, D., Dunkel, I., Lane, T.J., Peck, A., Saouane, S., Hakanpaeae, J., Meyer, J., Noei, H., Boger, J., Gribbon, P., Ellinger, B., Kuzikov, M., Wolf, M., Zhang, L., Ehrt, C., Pletzer-Zelgert, J., Wollenhaupt, J., Feiler, C., Weiss, M., Schulz, E.C., Mehrabi, P., Norton-Baker, B., Schmidt, C., Lorenzen, K., Schubert, R., Han, H., Chari, A., Fernandez Garcia, Y., Turk, D., Hilgenfeld, R., Rarey, M., Zaliani, A., Chapman, H.N., Pearson, A., Betzel, C., Meents, A.

(2021) Science 372: 642-646

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.68 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	CL, DMS, SIN

Explore in 3D

7AMJ \| pdb_00007amj	Download File View File

Structure of SARS-CoV-2 Main Protease bound to PD 168568.

Guenther, S., Reinke, P., Oberthuer, D., Yefanov, O., Gelisio, L., Ginn, H., Lieske, J., Domaracky, M., Brehm, W., Rahmani Mashour, A., White, T.A., Knoska, J., Pena Esperanza, G., Koua, F., Tolstikova, A., Groessler, M., Fischer, P., Hennicke, V., Fleckenstein, H., Trost, F., Galchenkova, M., Gevorkov, Y., Li, C., Awel, S., Paulraj, L.X., Ullah, N., Andaleeb, H., Werner, N., Falke, S., Hinrichs, W., Alves Franca, B., Schwinzer, M., Brognaro, H., Perbandt, M., Tidow, H., Seychell, B., Beck, T., Meier, S., Doyle, J.J., Giseler, H., Melo, D., Dunkel, I., Lane, T.J., Peck, A., Saouane, S., Hakanpaeae, J., Meyer, J., Noei, H., Boger, J., Gribbon, P., Ellinger, B., Kuzikov, M., Wolf, M., Zhang, L., Ehrt, C., Pletzer-Zelgert, J., Wollenhaupt, J., Feiler, C., Weiss, M., Schulz, E.C., Mehrabi, P., Norton-Baker, B., Schmidt, C., Lorenzen, K., Schubert, R., Han, H., Chari, A., Fernandez Garcia, Y., Turk, D., Hilgenfeld, R., Rarey, M., Zaliani, A., Chapman, H.N., Pearson, A., Betzel, C., Meents, A.

(2021) Science 372: 642-646

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.59 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	CL, DMS, RMZ

Explore in 3D

7AR5 \| pdb_00007ar5	Download File View File

Structure of apo SARS-CoV-2 Main Protease with small beta angle, space group C2.

Guenther, S., Reinke, P., Oberthuer, D., Yefanov, O., Gelisio, L., Ginn, H., Lieske, J., Domaracky, M., Brehm, W., Rahmani Mashour, A., White, T.A., Knoska, J., Pena Esperanza, G., Koua, F., Tolstikova, A., Groessler, M., Fischer, P., Hennicke, V., Fleckenstein, H., Trost, F., Galchenkova, M., Gevorkov, Y., Li, C., Awel, S., Paulraj, L.X., Ullah, N., Andaleeb, H., Werner, N., Falke, S., Hinrichs, W., Alves Franca, B., Schwinzer, M., Brognaro, H., Perbandt, M., Tidow, H., Seychell, B., Beck, T., Meier, S., Doyle, J.J., Giseler, H., Melo, D., Dunkel, I., Lane, T.J., Peck, A., Saouane, S., Hakanpaeae, J., Meyer, J., Noei, H., Boger, J., Gribbon, P., Ellinger, B., Kuzikov, M., Wolf, M., Zhang, L., Ehrt, C., Pletzer-Zelgert, J., Wollenhaupt, J., Feiler, C., Weiss, M., Schulz, E.C., Mehrabi, P., Norton-Baker, B., Schmidt, C., Lorenzen, K., Schubert, R., Han, H., Chari, A., Fernandez Garcia, Y., Turk, D., Hilgenfeld, R., Rarey, M., Zaliani, A., Chapman, H.N., Pearson, A., Betzel, C., Meents, A.

(2021) Science 372: 642-646

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	DMS

Explore in 3D

7AR6 \| pdb_00007ar6	Download File View File

Structure of apo SARS-CoV-2 Main Protease with large beta angle, space group C2.

Guenther, S., Reinke, P., Oberthuer, D., Yefanov, O., Gelisio, L., Ginn, H., Lieske, J., Domaracky, M., Brehm, W., Rahmani Mashour, A., White, T.A., Knoska, J., Pena Esperanza, G., Koua, F., Tolstikova, A., Groessler, M., Fischer, P., Hennicke, V., Fleckenstein, H., Trost, F., Galchenkova, M., Gevorkov, Y., Li, C., Awel, S., Paulraj, L.X., Ullah, N., Andaleeb, H., Werner, N., Falke, S., Hinrichs, W., Alves Franca, B., Schwinzer, M., Brognaro, H., Perbandt, M., Tidow, H., Seychell, B., Beck, T., Meier, S., Doyle, J.J., Giseler, H., Melo, D., Dunkel, I., Lane, T.J., Peck, A., Saouane, S., Hakanpaeae, J., Meyer, J., Noei, H., Boger, J., Gribbon, P., Ellinger, B., Kuzikov, M., Wolf, M., Zhang, L., Ehrt, C., Pletzer-Zelgert, J., Wollenhaupt, J., Feiler, C., Weiss, M., Schulz, E.C., Mehrabi, P., Norton-Baker, B., Schmidt, C., Lorenzen, K., Schubert, R., Han, H., Chari, A., Fernandez Garcia, Y., Turk, D., Hilgenfeld, R., Rarey, M., Zaliani, A., Chapman, H.N., Pearson, A., Betzel, C., Meents, A.

(2021) Science 372: 642-646

Released	2020-12-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	3C-like proteinase (protein)
Unique Ligands	CL, DMS

Explore in 3D

7NEV \| pdb_00007nev	Download File View File

Structure of the hemiacetal complex between the SARS-CoV-2 Main Protease and Leupeptin

Guenther, S., Reinke, P.Y.A., Oberthuer, D., Yefanov, O., Gelisio, L., Ginn, H.M., Lieske, J., Domaracky, M., Brehm, W., Rahmani Mashhour, A., White, T.A., Knoska, J., Pena Esperanza, G., Koua, F., Tolstikova, A., Groessler, M., Fischer, P., Hennicke, V., Fleckenstein, H., Trost, F., Galchenkova, M., Gevorkov, Y., Li, C., Awel, S., Xavier, P.L., Ullah, N., Andaleeb, H., Falke, S., Alves Franca, B., Schwinzer, M., Brognaro, H., Werner, N., Perbandt, M., Tidow, H., Seychell, B., Beck, T., Meier, S., Zaitsev-Doyle, J.J., Rogers, C., Gieseler, H., Melo, D., Monteiro, D.C.F., Dunkel, I., Lane, T.J., Peck, A., Saouane, S., Hakanpaeae, J., Meyer, J., Noei, H., Gribbon, P., Ellinger, B., Kuzikov, M., Wolf, M., Zhang, L., Ehrt, C., Pletzer-Zelgert, J., Wollenhaupt, J., Feiler, C., Weiss, M., Schluenzen, F., Schulz, E.C., Mehrabi, P., Norton-Baker, B., Schmidt, C., Lorenzen, K., Schubert, R., Sun, X., Han, H., Chari, A., Fernandez Garcia, Y., Turk, D., Hilgenfeld, R., Rarey, M., Zaliani, A., Chapman, H.N., Pearson, A., Betzel, C., Meents, A.

(2021) Science 372: 642-646

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Streptomyces roseus
Macromolecule	3C-like proteinase (protein) LEUPEPTIN (protein)
Unique Ligands	CL, DMS, IMD

Explore in 3D

7NFV \| pdb_00007nfv	Download File View File

Structure of SARS-CoV-2 Papain-like protease PLpro

Srinivasan, V., Gunther, S., Reinke, P., Werner, N., Falke, S., Brognaro, H., Ullah, N., Andaleeb, H., Perbandt, M., Alves Franca, B., Schwinzer, M., Wang, M., Sprenger, J., Lieske, J., Ginn, H., Lane, T.J., Yefanov, O., Gelisio, L., Koua, F., Saouane, S., Tolstikova, A., Groessler, M., Fleckenstein, H., Ewert, W., Trost, F., Lorenzen, K., Schubert, R., Han, H., Schmidt, C., Brings, L., Ehrt, C., Rarey, M., Galchenkova, M., Gevorkov, Y., Li, C., Perk, A., Awel, S., Hinrichs, W., Meents, A., Betzel, C.

(2022) Commun Biol 5: 805-805

Released	2021-02-24
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Papain-like protease nsp3 (protein)
Unique Ligands	CL, GOL, PO4, ZN

Explore in 3D

7OFS \| pdb_00007ofs	Download File View File

Structure of SARS-CoV-2 Papain-like protease PLpro in complex with 4-(2-hydroxyethyl)phenol

Srinivasan, V., Werner, N., Falke, S., Guenther, S., Reinke, P., Ewert, W., Sprenger, J., Koua, F., Brognaro, H., Ullah, N., Andaleeb, H., Perbandt, M., Alves Franca, B., Schwinzer, M., Wang, M., Lieske, J., Ginn, H., Lane, T.J., Yefanov, O., Gelisio, L., Hakanpaeae, J., Saouane, S., Tolstikova, A., Groessler, M., Fleckenstein, H., Trost, F., Wolf, M., Lorenzen, K., Schubert, R., Han, H., Schmidt, C., Brings, L., Galchenkova, M., Gevorkov, Y., Li, C., Perk, A., Awel, S., Wahab, A., Choudary, I., Turk, D., Hinrichs, W., Chapman, H.N., Meents, A., Betzel, C.

(2022) Commun Biol 5: 805-805

Released	2021-05-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Papain-like protease nsp3 (protein)
Unique Ligands	CL, GOL, PO4, YRL, ZN

Explore in 3D

7OFT \| pdb_00007oft	Download File View File

Structure of SARS-CoV-2 Papain-like protease PLpro in complex with p-hydroxybenzaldehyde

Srinivasan, V., Werner, N., Falke, S., Guenther, S., Reinke, P., Brognaro, H., Ullah, N., Andaleeb, H., Perbandt, M., Alves Franca, B., Schwinzer, M., Wang, M., Ewert, W., Sprenger, J., Lieske, J., Koua, F., Ginn, H., Lane, T.J., Wolf, M., Yefanov, O., Gelisio, L., Saouane, S., Tolstikova, A., Groessler, M., Fleckenstein, H., Trost, F., Lorenzen, K., Schubert, R., Han, H., Schmidt, C., Brings, L., Galchenkova, M., Gevorkov, Y., Li, C., Perk, A., Awel, S., Wahab, A., Choudary, I., Turk, D., Hinrichs, W., Chapman, H.N., Meents, A., Betzel, C.

(2022) Commun Biol 5: 805-805

Released	2021-05-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Papain-like protease nsp3 (protein)
Unique Ligands	CL, HBA, K, ZN

Explore in 3D

7OFU \| pdb_00007ofu	Download File View File

Structure of SARS-CoV-2 Papain-like protease PLpro in complex with 3, 4-Dihydroxybenzoic acid, methyl ester

Srinivasan, V., Ewert, W., Werner, N., Falke, S., Guenther, S., Reinke, P., Sprenger, J., Brognaro, H., Ullah, N., Andaleeb, H., Perbandt, M., Alves Franca, B., Schwinzer, M., Wang, M., Wolf, M., Lieske, J., Koua, F., Ginn, H., Lane, T.J., Yefanov, O., Gelisio, L., Hakanpaeae, J., Saouane, S., Tolstikova, A., Groessler, M., Fleckenstein, H., Trost, F., Lorenzen, K., Schubert, R., Han, H., Schmidt, C., Brings, L., Galchenkova, M., Gevorkov, Y., Li, C., Perk, A., Awel, S., Wahab, A., Choudary, I., Turk, D., Hinrichs, W., Chapman, H.N., Meents, A., Betzel, C.

(2022) Commun Biol 5: 805-805

Released	2021-05-12
Method	X-RAY DIFFRACTION 1.72 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Papain-like protease nsp3 (protein)
Unique Ligands	CL, GOL, HE9, PO4, ZN

Explore in 3D

7ZQ0 \| pdb_00007zq0	Download File View File

Room temperature SSX structure of GH11 xylanase from Nectria haematococca (1000 frames)

Oberthuer, D., Andaleeb, H., Betzel, C., Perbandt, M., Yefanov, O., Zielinski, K.

(2022) IUCrJ 9: 778-791

Released	2022-11-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Fusarium haematococcum
Macromolecule	Endo-1,4-beta-xylanase (protein)

Explore in 3D

8AF4 \| pdb_00008af4	Download File View File

Room temperature SSX structure of GH11 xylanase from Nectria haematococca (40000 frames)

Oberthuer, D., Andaleeb, H., Betzel, C., Perbandt, M., Yefanov, O., Zielinski, K.

(2022) IUCrJ 9: 778-791

Released	2022-11-16
Method	X-RAY DIFFRACTION 1.51 Å
Organisms	Fusarium haematococcum
Macromolecule	Endo-1,4-beta-xylanase (protein)

Explore in 3D

8AF5 \| pdb_00008af5	Download File View File

Room temperature SSX structure of GH11 xylanase from Nectria haematococca (10000 frames)

Oberthuer, D., Andaleeb, H., Betzel, C., Perbandt, M., Yefanov, O., Zielinski, K.

(2022) IUCrJ 9: 778-791

Released	2022-11-16
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Fusarium haematococcum
Macromolecule	Endo-1,4-beta-xylanase (protein)

Explore in 3D

8AF6 \| pdb_00008af6	Download File View File

Room temperature SSX structure of GH11 xylanase from Nectria haematococca (4000 frames)

Oberthuer, D., Andaleeb, H., Betzel, C., Perbandt, M., Yefanov, O., Zielinski, K.

(2022) IUCrJ 9: 778-791

Released	2022-11-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Fusarium haematococcum
Macromolecule	Endo-1,4-beta-xylanase (protein)

6Y0H | pdb_00006y0h

High resolution structure of GH11 xylanase from Nectria haematococca

7A1U | pdb_00007a1u

Structure of SARS-CoV-2 Main Protease bound to Fusidic Acid.

7AGA | pdb_00007aga

Structure of SARS-CoV-2 Main Protease bound to AT7519

7AHA | pdb_00007aha

Structure of SARS-CoV-2 Main Protease bound to Maleate.

7AMJ | pdb_00007amj

Structure of SARS-CoV-2 Main Protease bound to PD 168568.

7AR5 | pdb_00007ar5

Structure of apo SARS-CoV-2 Main Protease with small beta angle, space group C2.

7AR6 | pdb_00007ar6

Structure of apo SARS-CoV-2 Main Protease with large beta angle, space group C2.

7NEV | pdb_00007nev

Structure of the hemiacetal complex between the SARS-CoV-2 Main Protease and Leupeptin

7NFV | pdb_00007nfv

Structure of SARS-CoV-2 Papain-like protease PLpro

7OFS | pdb_00007ofs

Structure of SARS-CoV-2 Papain-like protease PLpro in complex with 4-(2-hydroxyethyl)phenol

7OFT | pdb_00007oft

Structure of SARS-CoV-2 Papain-like protease PLpro in complex with p-hydroxybenzaldehyde

7OFU | pdb_00007ofu

Structure of SARS-CoV-2 Papain-like protease PLpro in complex with 3, 4-Dihydroxybenzoic acid, methyl ester

7ZQ0 | pdb_00007zq0

Room temperature SSX structure of GH11 xylanase from Nectria haematococca (1000 frames)

8AF4 | pdb_00008af4

Room temperature SSX structure of GH11 xylanase from Nectria haematococca (40000 frames)

8AF5 | pdb_00008af5

Room temperature SSX structure of GH11 xylanase from Nectria haematococca (10000 frames)

8AF6 | pdb_00008af6

Room temperature SSX structure of GH11 xylanase from Nectria haematococca (4000 frames)

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

6Y0H | pdb_00006y0h

7A1U | pdb_00007a1u

7AGA | pdb_00007aga

7AHA | pdb_00007aha

7AMJ | pdb_00007amj

7AR5 | pdb_00007ar5

7AR6 | pdb_00007ar6

7NEV | pdb_00007nev

7NFV | pdb_00007nfv

7OFS | pdb_00007ofs

7OFT | pdb_00007oft

7OFU | pdb_00007ofu

7ZQ0 | pdb_00007zq0

8AF4 | pdb_00008af4

8AF5 | pdb_00008af5

8AF6 | pdb_00008af6