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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Structure Author = "Bonomo, R.A."

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Search Summary

This query matches 32 Structures.

Refinements

Structure Determination Methodology

experimental (32)

Scientific Name of Source Organism

	Klebsiella pneumoniae (21)
	Streptomyces clavuligerus (7)
	Acinetobacter baumannii (2)
	Burkholderia multivorans ATCC 17616 (2)
	Burkholderia pseudomallei K96243 (2)
	Escherichia coli (2)
	Salmonella enterica (2)
	Enterobacter cloacae (1)

Taxonomy

Bacteria (32)

Experimental Method

X-RAY DIFFRACTION (32)

Polymer Entity Type

Protein (32)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (12)
	1.5 - 2.0 (14)
	2.0 - 2.5 (5)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (8)
	2005 - 2009 (11)
	2010 - 2014 (7)
	2015 - 2019 (3)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (32)

Symmetry Type

Asymmetric (32)

SCOP Classification

	Multi-domain proteins (alpha and beta) (26)
	Alpha and beta proteins (a+b) (7)

AllSelected

1 to 25 of 32 Structures

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1N9B \| pdb_00001n9b	Download File View File

Ultrahigh resolution structure of a class A beta-lactamase: On the mechanism and specificity of the extended-spectrum SHV-2 enzyme

Nukaga, M., Mayama, K., Hujer, A.M., Bonomo, R.A., Knox, J.R.

(2003) J Mol Biology 328: 289-301

Released	2003-04-08
Method	X-RAY DIFFRACTION 0.9 Å
Organisms	Klebsiella pneumoniae
Macromolecule	BETA-LACTAMASE SHV-2 (protein)
Unique Ligands	EPE, MA4, MPD

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1ONG \| pdb_00001ong	Download File View File

SHV-1 beta-lactamase with a penem inhibitor

Nukaga, M., Mayama, K., Bonomo, R.A., Knox, J.R.

(2003) Biochemistry 42: 13152-13159

Released	2003-12-09
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Klebsiella pneumoniae
Macromolecule	BETA-LACTAMASE SHV-1 (protein)
Unique Ligands	MA4, WY4

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1Q2P \| pdb_00001q2p	Download File View File

SHV-1 class A beta-lactamase complexed with penem WAY185229

Nukaga, M., Venkatesan, A.M., Mansour, T.S., Hujer, A., Bonomo, R.A., Knox, J.R.

(2004) J Med Chem 47: 6556-6568

Released	2004-09-14
Method	X-RAY DIFFRACTION 2 Å
Organisms	Klebsiella pneumoniae
Macromolecule	beta-lactamase SHV-1 (protein)
Unique Ligands	MA4, WY2

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1Q2Q \| pdb_00001q2q	Download File View File

Enterobacter cloacae GC1 class C beta-lactamase complexed with penem WAY185229

Nukaga, M., Venkatesan, A.M., Mansour, T.S., Hujer, A., Bonomo, R.A., Knox, J.R.

(2004) J Med Chem 47: 6556-6568

Released	2004-09-14
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Enterobacter cloacae
Macromolecule	class C beta-lactamase (protein)
Unique Ligands	GOL, WY2

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1RCJ \| pdb_00001rcj	Download File View File

Crystal structure of E166A mutant of SHV-1 beta-lactamase with the trans-enamine intermediate of tazobactam

Padayatti, P.S., Helfand, M.S., Totir, M.A., Carey, M.P., Hujer, A.M., Carey, P.R., Bonomo, R.A., van den Akker, F.

(2004) Biochemistry 43: 843-848

Released	2004-02-17
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase SHV-1 (protein)
Unique Ligands	MA4, TBI

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1SHV \| pdb_00001shv	Download File View File

STRUCTURE OF SHV-1 BETA-LACTAMASE

Kuzin, A.P., Nukaga, M., Nukaga, Y., Hujer, A., Bonomo, R.A., Knox, J.R.

(1999) Biochemistry 38: 5720-5727

Released	1999-05-06
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Klebsiella pneumoniae
Macromolecule	PROTEIN (BETA-LACTAMASE SHV-1) (protein)
Unique Ligands	MA4

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1TDG \| pdb_00001tdg	Download File View File

Complex of S130G SHV-1 beta-lactamase with tazobactam

Sun, T., Bethel, C.R., Bonomo, R.A., Knox, J.R.

(2004) Biochemistry 43: 14111-14117

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase SHV-1 (protein)
Unique Ligands	MA4, MDD, MPD, MRD, TBE

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1TDL \| pdb_00001tdl	Download File View File

Structure of Ser130Gly SHV-1 beta-lactamase

Sun, T., Bethel, C.R., Bonomo, R.A., Knox, J.R.

(2004) Biochemistry 43: 14111-14117

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase SHV-1 (protein)
Unique Ligands	EPE, MA4

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1VM1 \| pdb_00001vm1	Download File View File

STRUCTURE OF SHV-1 BETA-LACTAMASE INHIBITED BY TAZOBACTAM

Kuzin, A.P., Nukaga, M., Nukaga, Y., Hujer, A., Bonomo, R.A., Knox, J.R.

(2001) Biochemistry 40: 1861-1866

Released	2004-09-07
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Klebsiella pneumoniae
Macromolecule	BETA-LACTAMASE SHV-1 (protein)
Unique Ligands	AKR, MA4, TAZ, TBE

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2A3U \| pdb_00002a3u	Download File View File

Crystal structure of sulbactam bound to E166A variant of SHV-1 beta-lactamase

Padayatti, P.S., Helfand, M.S., Totir, M.A., Carey, M.P., Carey, P.R., Bonomo, R.A., van den Akker, F.

(2005) J Biological Chem 280: 34900-34907

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.34 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase SHV-1 (protein)
Unique Ligands	EPE, MA4, TSL

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2A49 \| pdb_00002a49	Download File View File

Crystal structure of clavulanic acid bound to E166A variant of SHV-1 beta-lactamase

Padayatti, P.S., Helfand, M.S., Totir, M.A., Carey, M.P., Carey, P.R., Bonomo, R.A., van den Akker, F.

(2005) J Biological Chem 280: 34900-34907

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase SHV-1 (protein)
Unique Ligands	EPE, MA4, TEM

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2G2U \| pdb_00002g2u	Download File View File

Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) complex

Reynolds, K.A., Thomson, J.M., Corbett, K.D., Bethel, C.R., Berger, J.M., Kirsch, J.F., Bonomo, R.A., Handel, T.M.

(2006) J Biological Chem 281: 26745-26753

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)

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2G2W \| pdb_00002g2w	Download File View File

Crystal Structure of the SHV D104K Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) complex

Reynolds, K.A., Thomson, J.M., Corbett, K.D., Bethel, C.R., Berger, J.M., Kirsch, J.F., Bonomo, R.A., Handel, T.M.

(2006) J Biological Chem 281: 26745-26753

Released	2006-07-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)

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2OV5 \| pdb_00002ov5	Download File View File

Crystal structure of the KPC-2 carbapenemase

Ke, W., Bethel, C.R., Thomson, J.M., Bonomo, R.A., van den Akker, F.

(2007) Biochemistry 46: 5732-5740

Released	2007-05-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Carbapenemase (protein)
Unique Ligands	BCN

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2ZD8 \| pdb_00002zd8	Download File View File

SHV-1 class A beta-lactamase complexed with meropenem

Nukaga, M., Knox, J.R., Hujer, A., Bonomo, R.A.

(2008) J Am Chem Soc 130: 12656-12662

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.05 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase SHV-1 (protein)
Unique Ligands	MA4, MER

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3C4O \| pdb_00003c4o	Download File View File

Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) E73M/S130K/S146M complex

Reynolds, K.A., Hanes, M.S., Thomson, J.M., Antczak, A.J., Berger, J.M., Bonomo, R.A., Kirsch, J.F., Handel, T.M.

(2008) J Mol Biology 382: 1265-1275

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)
Unique Ligands	SO4

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3C4P \| pdb_00003c4p	Download File View File

Crystal Structure of the SHV-1 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP) E73M complex

Reynolds, K.A., Hanes, M.S., Thomson, J.M., Antczak, A.J., Berger, J.M., Bonomo, R.A., Kirsch, J.F., Handel, T.M.

(2008) J Mol Biology 382: 1265-1275

Released	2008-05-27
Method	X-RAY DIFFRACTION 1.75 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)
Unique Ligands	SO4

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3D4F \| pdb_00003d4f	Download File View File

SHV-1 beta-lactamase complex with LN1-255

Pattanaik, P., Bethel, C.R., Hujer, A.M., Bonomo, R.A., Buynak, J.D., van den Akker, F.

(2009) J Biological Chem 284: 945-953

Released	2009-02-10
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Klebsiella pneumoniae
Macromolecule	Beta-lactamase SHV-1 (protein)
Unique Ligands	LN1, MA4

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3E2K \| pdb_00003e2k	Download File View File

Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)

Hanes, M.S., Jude, K.M., Berger, J.M., Bonomo, R.A., Handel, T.M.

(2009) Biochemistry 48: 9185-9193

Released	2009-08-04
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase inhibitory protein (protein) Carbapenemase (protein)

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3E2L \| pdb_00003e2l	Download File View File

Crystal Structure of the KPC-2 Beta-lactamase/Beta-lactamase inhibitor protein (BLIP)

Hanes, M.S., Jude, K.M., Berger, J.M., Kirsch, J.F., Bonomo, R.A., Handel, T.M.

(2009) Biochemistry 48: 9185-9193

Released	2009-08-04
Method	X-RAY DIFFRACTION 1.87 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase inhibitory protein (protein) Carbapenemase (protein)

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3FV7 \| pdb_00003fv7	Download File View File

OXA-24 beta-lactamase complex with SA4-44 inhibitor

Bou, G., Santillana, E., Sheri, A., Beceiro, A., Sampson, J.M., Kalp, M., Bethel, C.R., Distler, A.M., Drawz, S.M., Pagadala, S.R., Van den Akker, F., Bonomo, R.A., Romero, A., Buynak, J.D.

(2010) J Am Chem Soc 132: 13320-13331

Released	2010-02-02
Method	X-RAY DIFFRACTION 2 Å
Organisms	Acinetobacter baumannii
Macromolecule	Beta-lactamase OXA-24 (protein)
Unique Ligands	MXS

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3N4I \| pdb_00003n4i	Download File View File

Crystal structure of the SHV-1 D104E beta-lactamase/beta-lactamase inhibitor protein (BLIP) complex

Hanes, M.S., Reynolds, K.A., McNamara, C., Ghosh, P., Bonomo, R.A., Kirsch, J.F., Handel, T.M.

(2011) Proteins 79: 1267-1276

Released	2011-03-09
Method	X-RAY DIFFRACTION 1.56 Å
Organisms	Klebsiella pneumoniae Streptomyces clavuligerus
Macromolecule	Beta-lactamase SHV-1 (protein) Beta-lactamase inhibitory protein (protein)