RCSB PDB: Search

5VQT \| pdb_00005vqt	Download File View File

Crystal Structure of HIV-1 Reverse Transcriptase in Complex with 2-chloro-N-(6-cyano-3-(2-(2-(2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)ethoxy)phenoxy)-4-methylnaphthalen-1-yl)-N-methylacetamide (JLJ686), a Non-nucleoside Inhibitor

Chan, A.H., Czyzyk, D.J., Anderson, K.S.

(2017) Proc Natl Acad Sci U S A 114: 9725-9730

Released	2017-08-23
Method	X-RAY DIFFRACTION 2.556 Å
Organisms	Human immunodeficiency virus type 1 BH10
Macromolecule	Reverse transcriptase/ribonuclease H (protein) p51 RT (protein)
Unique Ligands	9K7, SO4

Explore in 3D

6OJS \| pdb_00006ojs	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP, MTX and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-D-glutamic acid

Czyzyk, D.J., Anderson, K.S., Jorgensen, W.L., Valhondo, M.

(2019) FEBS Lett 593: 2069-2078

Released	2019-06-19
Method	X-RAY DIFFRACTION 3.214 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	D96, MTX, NDP, UFP

Explore in 3D

6OJU \| pdb_00006oju	Download File View File

Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-D-glutamic acid

Czyzyk, D.J., Anderson, K.S., Valhondo, M., Jorgensen, W.L.

(2019) FEBS Lett 593: 2069-2078

Released	2019-06-19
Method	X-RAY DIFFRACTION 2.884 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase,Thymidylate synthase (protein)
Unique Ligands	D96, UMP

Explore in 3D

6OJV \| pdb_00006ojv	Download File View File

Crystal structure of human thymidylate synthase delta(7-29) in complex with dUMP and 2-amino-4-oxo-4,7-dihydro-pyrrolo[2,3-d]pyrimidine-methyl-phenyl-L-glutamic acid

Czyzyk, D.J., Anderson, K.S., Valhondo, M., Jorgensen, W.L.

(2019) FEBS Lett 593: 2069-2078

Released	2019-06-19
Method	X-RAY DIFFRACTION 2.593 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase,Thymidylate synthase (protein)
Unique Ligands	2XB, UMP

Explore in 3D

6PF3 \| pdb_00006pf3	Download File View File

Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-chlorobenzoic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.391 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	OE7, UMP

Explore in 3D

6PF4 \| pdb_00006pf4	Download File View File

Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)phenyl)acetic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.854 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	OF7, UMP

Explore in 3D

6PF5 \| pdb_00006pf5	Download File View File

Crystal structure of human thymidylate synthase Delta (7-29) in complex with dUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-methoxyphenyl)acetic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	Thymidylate synthase (protein)
Unique Ligands	OED, UMP

Explore in 3D

6PF7 \| pdb_00006pf7	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)benzoic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.795 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OG7, SO4, UFP

Explore in 3D

6PF8 \| pdb_00006pf8	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-chlorobenzoic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.533 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OE7, UFP

Explore in 3D

6PF9 \| pdb_00006pf9	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)phenyl)acetic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OF7, SO4, UFP

Explore in 3D

6PFA \| pdb_00006pfa	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-((4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)methyl)benzoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OF4, SO4, UFP

Explore in 3D

6PFB \| pdb_00006pfb	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 3-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)phenyl)propanoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 3.089 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OG4, UFP

Explore in 3D

6PFC \| pdb_00006pfc	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-methoxyphenyl)acetic acid

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-16
Method	X-RAY DIFFRACTION 2.689 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OED, UFP

Explore in 3D

6PFD \| pdb_00006pfd	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)terephthalic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 3.324 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OEJ, UFP

Explore in 3D

6PFE \| pdb_00006pfe	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-methoxybenzoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.812 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OEA, UFP

Explore in 3D

6PFF \| pdb_00006pff	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-cyanobenzoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.982 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OG1, SO4, UFP

Explore in 3D

6PFG \| pdb_00006pfg	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 2-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-carbamoylbenzoic acid.

Czyzyk, D.J., Valhondo, M., Jorgensen, W.L., Anderson, K.S.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.706 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OFJ, SO4, UFP

Explore in 3D

6PFI \| pdb_00006pfi	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis in complex with NADPH, FdUMP and 3-(4-((2-amino-4-oxo-4,7-dihydro-3H-pyrrolo[2,3-d]pyrimidin-5-yl)methyl)benzamido)-4-(carboxymethyl)benzoic acid.

Czyzyk, D.J., Anderson, K.S., Jorgensen, W.L., Valhondo, M.

(2019) Eur J Med Chem 183: 111673-111673

Released	2019-10-02
Method	X-RAY DIFFRACTION 2.89 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP, OEP, UFP

Explore in 3D

6WEP \| pdb_00006wep	Download File View File

Crystal structure of TS-DHFR from Cryptosporidium hominis with Apo-TS site

Czyzyk, D.J., Ruiz, V.G., Kumar, V.P., Jorgensen, W.L., Anderson, K.S.

(2020) Bioorg Med Chem Lett 30: 127292-127298

Released	2020-06-17
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Cryptosporidium hominis
Macromolecule	Bifunctional dihydrofolate reductase-thymidylate synthase (protein)
Unique Ligands	MTX, NDP

Explore in 3D

9B4Q \| pdb_00009b4q	Download File View File

Crystal structure of RRAS2 (RAS-Related protein) bound to GMPPNP

Czyzyk, D.J., Simanshu, D.K.

(2025) Nat Commun 16: 525-525

Released	2025-01-22
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein R-Ras2 (protein)
Unique Ligands	GNP, MG

Explore in 3D

9B4R \| pdb_00009b4r	Download File View File

Crystal structure of MRAS bound to GMPPNP

Czyzyk, D.J., Simanshu, D.K.

(2025) Nat Commun 16: 525-525

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Ras-related protein M-Ras (protein)
Unique Ligands	GNP, MG, ZN

Explore in 3D

9B4S \| pdb_00009b4s	Download File View File

Crystal structure of the RRAS2-p110alpha complex

Czyzyk, D.J., Simanshu, D.K.

(2025) Nat Commun 16: 525-525

Released	2025-01-22
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein) Ras-related protein R-Ras2 (protein)
Unique Ligands	5H5, GNP, MG

Explore in 3D

9B4T \| pdb_00009b4t	Download File View File

Crystal structure of the MRAS-p110alpha complex

Czyzyk, D.J., Simanshu, D.K.

(2025) Nat Commun 16: 525-525

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.75 Å
Organisms	Homo sapiens
Macromolecule	Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein) Ras-related protein M-Ras (protein)
Unique Ligands	5H5, GNP, MG

Explore in 3D

9C15 \| pdb_00009c15	Download File View File

Crystal structure of the KRAS-p110alpha complex with molecular glue D927

Yan, W., Czyzyk, D.J., Simanshu, D.K.

(2025) Nat Commun 16: 525-525

Released	2025-01-22
Method	X-RAY DIFFRACTION 2.81 Å
Organisms	Homo sapiens
Macromolecule	GTPase KRas (protein) Phosphatidylinositol 4,5-bisphosphate 3-kinase catalytic subunit alpha isoform (protein)
Unique Ligands	A1ATF, GNP, IPA, MG

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

5VQT | pdb_00005vqt

6OJS | pdb_00006ojs

6OJU | pdb_00006oju

6OJV | pdb_00006ojv

6PF3 | pdb_00006pf3

6PF4 | pdb_00006pf4

6PF5 | pdb_00006pf5

6PF7 | pdb_00006pf7

6PF8 | pdb_00006pf8

6PF9 | pdb_00006pf9

6PFA | pdb_00006pfa

6PFB | pdb_00006pfb

6PFC | pdb_00006pfc

6PFD | pdb_00006pfd

6PFE | pdb_00006pfe

6PFF | pdb_00006pff

6PFG | pdb_00006pfg

6PFI | pdb_00006pfi

6WEP | pdb_00006wep

9B4Q | pdb_00009b4q

9B4R | pdb_00009b4r

9B4S | pdb_00009b4s

9B4T | pdb_00009b4t

9C15 | pdb_00009c15