RCSB PDB: Search

5NJM \| pdb_00005njm	Download File View File

Lysozyme room-temperature structure determined by serial millisecond crystallography

Weinert, T., Vera, L., Marsh, M., James, D., Gashi, D., Nogly, P., Jaeger, K., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Gallus gallus
Macromolecule	Lysozyme C (protein)

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5NLX \| pdb_00005nlx	Download File View File

A2A Adenosine receptor room-temperature structure determined by serial millisecond crystallography

Weinert, T., Cheng, R., James, D., Gashi, D., Nogly, P., Jaeger, K., Dore, A.S., Geng, T., Cooke, R., Hennig, M., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, NA, OLA, ZMA

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5NM2 \| pdb_00005nm2	Download File View File

A2A Adenosine receptor cryo structure

Weinert, T., Cheng, R., James, D., Gashi, D., Nogly, P., Jaeger, K., Dore, A.S., Geng, T., Cooke, R., Hennig, M., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 1.948 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, NA, OLA, OLB, OLC, ZMA

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5NM4 \| pdb_00005nm4	Download File View File

A2A Adenosine receptor room-temperature structure determined by serial femtosecond crystallography

Weinert, T., Cheng, R., James, D., Gashi, D., Nogly, P., Jaeger, K., Hennig, M., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, NA, OLA, ZMA

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5NM5 \| pdb_00005nm5	Download File View File

Tubulin Darpin room-temperature structure in complex with Colchicine determined by serial millisecond crystallography

Weinert, T., Olieric, N., James, D., Gashi, D., Nogly, P., Jaeger, K., Steinmetz, M.O., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, LOC, MG

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5NQT \| pdb_00005nqt	Download File View File

Tubulin Darpin room-temperature structure determined by serial millisecond crystallography

Weinert, T., Olieric, N., James, D., Gashi, D., Nogly, P., Jaeger, K., Steinmetz, M.O., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Bos taurus synthetic construct
Macromolecule	DESIGNED ANKYRIN REPEAT PROTEIN (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG

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5NQU \| pdb_00005nqu	Download File View File

Tubulin Darpin cryo structure

Weinert, T., Olieric, N., James, D., Gashi, D., Nogly, P., Jaeger, K., Steinmetz, M.O., Standfuss, J.

(2017) Nat Commun 8: 542-542

Released	2017-09-27
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus synthetic construct
Macromolecule	Designed Ankyrin Repeat Protein (DARPIN) D1 (protein) Tubulin alpha-1B chain (protein) Tubulin beta-2B chain (protein)
Unique Ligands	GDP, GTP, MG

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6G7H \| pdb_00006g7h	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: resting state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6G7I \| pdb_00006g7i	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 49-406 fs state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6G7J \| pdb_00006g7j	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 457-646 fs state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6G7K \| pdb_00006g7k	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 10 ps state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6G7L \| pdb_00006g7l	Download File View File

Retinal isomerization in bacteriorhodopsin revealed by a femtosecond X-ray laser: 8.3 ms state structure

Nogly, P., Weinert, T., James, D., Cabajo, S., Ozerov, D., Furrer, A., Gashi, D., Borin, V., Skopintsev, P., Jaeger, K., Nass, K., Bath, P., Bosman, R., Koglin, J., Seaberg, M., Lane, T., Kekilli, D., Bruenle, S., Tanaka, T., Wu, W., Milne, C., White, T., Barty, A., Weierstall, U., Panneels, V., Nango, E., Iwata, S., Hunter, M., Schapiro, I., Schertler, G., Neutze, R., Standfuss, J.

(2018) Science 361:

Released	2018-06-27
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Halobacterium salinarum NRC-1
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	LI1, OLC, RET

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6TK1 \| pdb_00006tk1	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 20ms structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, RET

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6TK2 \| pdb_00006tk2	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ms structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, NA, RET

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6TK3 \| pdb_00006tk3	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 30us+150us structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK4 \| pdb_00006tk4	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 1ns+16ns structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK5 \| pdb_00006tk5	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: 800fs+2ps structure of KR2 with extrapolated, light and dark datasets

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK6 \| pdb_00006tk6	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in neutral conditions with attached light datasets at 800fs, 2ps, 100ps, 1ns, 16ns, 1us, 30us, 150us, 1ms and 20ms

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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6TK7 \| pdb_00006tk7	Download File View File

Femtosecond to millisecond structural changes in a light-driven sodium pump: Dark structure in acidic conditions

Skopintsev, P., Ehrenberg, D., Weinert, T., James, D., Kar, R., Johnson, P., Ozerov, D., Furrer, A., Martiel, I., Dworkowski, F., Nass, K., Knopp, G., Cirelli, C., Gashi, D., Mous, S., Wranik, M., Gruhl, T., Kekilli, D., Bruenle, S., Deupi, X., Schertler, G.F.X., Benoit, R., Panneels, V., Nogly, P., Schapiro, I., Milne, C., Heberle, J., Standfuss, J.

(2020) Nature 583: 314-318

Released	2020-05-27
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Dokdonia eikasta
Macromolecule	Sodium pumping rhodopsin (protein)
Unique Ligands	LFA, RET

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7O8F \| pdb_00007o8f	Download File View File

NmHR dark state structure determined by serial femtosecond crystallography

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8G \| pdb_00007o8g	Download File View File

NmHR light state structure at 10 ps after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8H \| pdb_00007o8h	Download File View File

NmHR light state structure at 10 ns after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8I \| pdb_00007o8i	Download File View File

NmHR light state structure at 1 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8J \| pdb_00007o8j	Download File View File

NmHR light state structure at 20 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	CL, OLA, OLC, RET

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7O8K \| pdb_00007o8k	Download File View File

NmHR light state structure at 300 us after photoexcitation determined by serial femtosecond crystallography (with extrapolated, dark and light dataset)

Mous, S., Gotthard, G., Ehrenberg, D., Sen, S., James, D., Johnson, P., Weinert, T., Nass, K., Furrer, A., Kekilli, D., Ma, P., Bruenle, S., Casadei, C., Martiel, I., Dworkowski, F., Gashi, D., Skopintsev, P., Wranik, M., Knopp, G., Panepucci, E., Panneels, V., Cirelli, C., Ozerov, D., Schertler, G., Wang, M., Milne, C., Standfuss, J., Schapiro, I., Heberle, J., Nogly, P.

(2022) Science 375: 845-851

Released	2022-02-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Nonlabens marinus S1-08
Macromolecule	Chloride pumping rhodopsin (protein)
Unique Ligands	OLA, OLC, RET

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

5NJM | pdb_00005njm

5NLX | pdb_00005nlx

5NM2 | pdb_00005nm2

5NM4 | pdb_00005nm4

5NM5 | pdb_00005nm5

5NQT | pdb_00005nqt

5NQU | pdb_00005nqu

6G7H | pdb_00006g7h

6G7I | pdb_00006g7i

6G7J | pdb_00006g7j

6G7K | pdb_00006g7k

6G7L | pdb_00006g7l

6TK1 | pdb_00006tk1

6TK2 | pdb_00006tk2

6TK3 | pdb_00006tk3

6TK4 | pdb_00006tk4

6TK5 | pdb_00006tk5

6TK6 | pdb_00006tk6

6TK7 | pdb_00006tk7

7O8F | pdb_00007o8f

7O8G | pdb_00007o8g

7O8H | pdb_00007o8h

7O8I | pdb_00007o8i

7O8J | pdb_00007o8j

7O8K | pdb_00007o8k