RCSB PDB: Search

4L29 \| pdb_00004l29	Download File View File

Structure of wtMHC class I with NY-ESO1 double mutant

Halabelian, L., Giorgetti, S., Bellotti, V., Bolognesi, M., Ricagno, S.

(2014) J Biological Chem 289: 3318-3327

Released	2013-12-25
Method	X-RAY DIFFRACTION 3.09 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) NY-ESO1 DOUBLE MUTANT (1Y, 9V) (protein)
Unique Ligands	CL, GOL

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4L3C \| pdb_00004l3c	Download File View File

Structure of HLA-A2 in complex with D76N b2m mutant and NY-ESO1 double mutant

Halabelian, L., Giorgetti, S., Bellotti, V., Bolognesi, M., Ricagno, S.

(2014) J Biological Chem 289: 3318-3327

Released	2013-12-25
Method	X-RAY DIFFRACTION 2.64 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) NY-ESO1 double mutant (1Y, 9V) (protein)
Unique Ligands	CL, GOL

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4R9H \| pdb_00004r9h	Download File View File

Crystal structure of dimeric S33C beta-2 microglobulin mutant at 1.9 Angstrom resolution

Halabelian, L., Bolognesi, M., Ricagno, S.

(2015) Sci Rep 5: 14651-14651

Released	2015-09-09
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein)

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4RA3 \| pdb_00004ra3	Download File View File

Crystal structure of dimeric S33C beta-2 microglobulin mutant in complex with Thioflavin (ThT) at 2.8 Angstrom resolution

Halabelian, L., Bolognesi, M., Ricagno, S.

(2015) Sci Rep 5: 14651-14651

Released	2015-09-09
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein)
Unique Ligands	TFX

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4RAH \| pdb_00004rah	Download File View File

Crystal structure of dimeric S33C beta-2 microglobulin mutant at 1.4 Angstrom resolution

Halabelian, L., Bolognesi, M., Ricagno, S.

(2015) Sci Rep 5: 14651-14651

Released	2015-09-16
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein)

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5J3E \| pdb_00005j3e	Download File View File

Crystal Structure of Human THYN1 protein in complex with 5-methylcytosine containing DNA

Halabelian, L., Tempel, W., Li, Y., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

To be published

Released	2016-04-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Thymocyte nuclear protein 1 (protein) 5-methylcytosine containing DNA (nucleic acid)
Unique Ligands	UNX

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5KO9 \| pdb_00005ko9	Download File View File

Crystal Structure of the SRAP Domain of Human HMCES Protein

Halabelian, L., Li, Y., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2019) Nat Struct Mol Biol 26: 607-612

Released	2016-08-24
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (protein)
Unique Ligands	UNX

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5WAX \| pdb_00005wax	Download File View File

Crystal Structure of Sugarcane SAPK10 (serine/threonine-protein kinase 10)

Righetto, G.L., Counago, R.M., Halabelian, L., Santiago, A.S., Massirer, K.B., Arruda, P., Gileadi, O., Menossi, M., Edwards, A.M., Elkins, J.M., Structural Genomics Consortium (SGC)

To be published

Released	2018-08-15
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharum officinarum species complex
Macromolecule	SAPK10 (serine/threonine-protein kinase 10) (protein)
Unique Ligands	GOL

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5WBV \| pdb_00005wbv	Download File View File

Crystal Structure of the SET Domain of Human SUV420H1 In Complex With Inhibitor

Halabelian, L., Tempel, W., Brown, P.J., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

To be published

Released	2017-07-19
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase KMT5B (protein)
Unique Ligands	9ZY, SAM, UNX, ZN

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5WCJ \| pdb_00005wcj	Download File View File

Crystal Structure of Human Methyltransferase-like protein 13 in complex with SAH

Halabelian, L., Loppnau, P., Seitova, A., Hutchinson, A., Hunt, B., Dong, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2018) Nat Commun 9: 3411-3411

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Methyltransferase-like protein 13 (protein)
Unique Ligands	SAH, UNX

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6BW3 \| pdb_00006bw3	Download File View File

Crystal structure of RBBP4 in complex with PRDM3 N-terminal peptide

Ivanochko, D., Halabelian, L., Hutchinson, A., Seitova, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2019) Nucleic Acids Res 47: 1225-1238

Released	2017-12-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) MDS1 and EVI1 complex locus protein MDS1 (protein)
Unique Ligands	UNX

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6BW4 \| pdb_00006bw4	Download File View File

Crystal structure of RBBP4 in complex with PRDM16 N-terminal peptide

Ivanochko, D., Halabelian, L., Hutchinson, A., Seitova, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2019) Nucleic Acids Res 47: 1225-1238

Released	2017-12-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Histone-binding protein RBBP4 (protein) PR domain zinc finger protein 16 (protein)
Unique Ligands	UNX

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6CE6 \| pdb_00006ce6	Download File View File

Structure of HDAC6 zinc-finger ubiquitin binding domain soaked with 3,3'-(benzo[1,2-d:5,4-d']bis(thiazole)-2,6-diyl)dipropionic acid

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYP, UNX, ZN

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6CE8 \| pdb_00006ce8	Download File View File

Crystal structure of fragment 2-(Benzo[d]thiazol-2-yl)acetic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYV, UNX, ZN

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6CEA \| pdb_00006cea	Download File View File

Crystal structure of fragment 3-(quinolin-2-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYY, UNX, ZN

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6CEC \| pdb_00006cec	Download File View File

Crystal structure of fragment 3-(3-Methoxy-2-quinoxalinyl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Franzoni, I., Ravichandran, M., Lautens, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EY7, UNX, ZN

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6CED \| pdb_00006ced	Download File View File

Crystal structure of fragment 3-(3-Methyl-4-oxo-3,4-dihydroquinazolin-2-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Franzoni, I., Ravichandran, M., Lautens, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYA, UNX, ZN

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6CEE \| pdb_00006cee	Download File View File

Crystal structure of fragment 3-(1-Methyl-2-oxo-1,2-dihydroquinoxalin-3-yl)propionic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Franzoni, I., Ravichandran, M., Lautens, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYM, UNX, ZN

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6CEF \| pdb_00006cef	Download File View File

Crystal structure of fragment 3-(1,3-Benzothiazol-2-yl)propanoic acid bound in the ubiquitin binding pocket of the HDAC6 zinc-finger domain

Harding, R.J., Halabelian, L., Ferreira de Freitas, R., Ravichandran, M., Santhakumar, V., Schapira, M., Bountra, C., Edwards, A.M., Arrowsmith, C.M., Structural Genomics Consortium (SGC)

(2018) J Med Chem 61: 4517-4527

Released	2018-02-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Histone deacetylase 6 (protein)
Unique Ligands	EYJ, UNX, ZN

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6MIW \| pdb_00006miw	Download File View File

WWE domain of human HUWE1

Halabelian, L., Loppnau, P., Tempel, W., Wong, F., Bountra, C., Arrowsmith, C.H., Edwards, A.M., Tong, Y., Structural Genomics Consortium (SGC)

To be published

Released	2018-10-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	E3 ubiquitin-protein ligase HUWE1 (protein)
Unique Ligands	MES, UNX

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6N31 \| pdb_00006n31	Download File View File

WD repeats of human WDR12

Halabelian, L., Zeng, H., Tempel, W., Li, Y., Seitova, A., Hutchinson, A., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

To be published

Released	2018-12-12
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Ribosome biogenesis protein WDR12 (protein)
Unique Ligands	UNX

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6NM4 \| pdb_00006nm4	Download File View File

Crystal structure of SAM-bound PRDM9 in complex with MRK-740 inhibitor

Ivanochko, D., Halabelian, L., Fischer, C., Sanders, J.M., Kattar, S.D., Brown, P.J., Edwards, A.M., Bountra, C., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2019) Nat Commun 10: 5759-5759

Released	2019-02-13
Method	X-RAY DIFFRACTION 2.58 Å
Organisms	Homo sapiens
Macromolecule	Histone-lysine N-methyltransferase PRDM9 (protein)
Unique Ligands	KS7, SAM, UNX, ZN

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6OE7 \| pdb_00006oe7	Download File View File

Crystal structure of HMCES cross-linked to DNA abasic site

Halabelian, L., Li, Y., Zeng, H., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2019) Nat Struct Mol Biol 26: 607-612

Released	2019-04-24
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (protein) DNA (5'-D(CPCPAPGPAPCPGPTP(DRZ)PGPTPT)-3') (nucleic acid) DNA (5'-D(GPTPCPTPGPG)-3') (nucleic acid)
Unique Ligands	EDO, UNX

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6OEA \| pdb_00006oea	Download File View File

Crystal structure of HMCES SRAP domain in complex with longer 3' overhang DNA

Halabelian, L., Ravichandran, M., Li, Y., Zeng, H., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2019) Nat Struct Mol Biol 26: 607-612

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (protein) DNA (5'-D(CPCPAPGPAPCPGPTPTPGPTPT)-3') (nucleic acid) DNA (5'-D(GPTPCPTPGPG)-3') (nucleic acid)
Unique Ligands	EDO, UNX

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6OEB \| pdb_00006oeb	Download File View File

Crystal structure of HMCES SRAP domain in complex with 3' overhang DNA

Halabelian, L., Ravichandran, M., Li, Y., Zeng, H., Bountra, C., Edwards, A.M., Arrowsmith, C.H., Structural Genomics Consortium (SGC)

(2019) Nat Struct Mol Biol 26: 607-612

Released	2019-04-10
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Embryonic stem cell-specific 5-hydroxymethylcytosine-binding protein (protein) DNA (5'-D(CPCPAPGPAPCPGPTPT)-3') (nucleic acid) DNA (5'-D(GPTPCPTPGP*G)-3') (nucleic acid)
Unique Ligands	EDO, UNX

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

4L29 | pdb_00004l29

4L3C | pdb_00004l3c

4R9H | pdb_00004r9h

4RA3 | pdb_00004ra3

4RAH | pdb_00004rah

5J3E | pdb_00005j3e

5KO9 | pdb_00005ko9

5WAX | pdb_00005wax

5WBV | pdb_00005wbv

5WCJ | pdb_00005wcj

6BW3 | pdb_00006bw3

6BW4 | pdb_00006bw4

6CE6 | pdb_00006ce6

6CE8 | pdb_00006ce8

6CEA | pdb_00006cea

6CEC | pdb_00006cec

6CED | pdb_00006ced

6CEE | pdb_00006cee

6CEF | pdb_00006cef

6MIW | pdb_00006miw

6N31 | pdb_00006n31

6NM4 | pdb_00006nm4

6OE7 | pdb_00006oe7

6OEA | pdb_00006oea

6OEB | pdb_00006oeb