RCSB PDB: Search

4V11 \| pdb_00004v11	Download File View File

Structure of Synaptotagmin-1 with SV2A peptide phosphorylated at Thr84

Zhang, N., Gordon, S.L., Fritsch, M.J., Esoof, N., Campbell, D., Gourlay, R., Velupillai, S., Macartney, T., Peggie, M., vanAalten, D.M.F., Cousin, M.A., Alessi, D.R.

(2015) J Neurosci 35: 2492

Released	2015-02-25
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	SYNAPTIC VESICLE GLYCOPROTEIN 2A (protein) SYNAPTOTAGMIN-1 (protein)
Unique Ligands	CA, GOL

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5A4R \| pdb_00005a4r	Download File View File

Crystal structure of a vitamin B12 trafficking protein

Kopec, J., Fitzpatrick, F., Froese, D.S., Velupillai, S., Nowak, R., Chalk, R., Burgess-Brown, N., von Delft, F., Arrowsmith, C., Edwards, A., Bountra, C., Fowler, B., Baumgartner, M.R., Yue, W.W.

(2015) J Biological Chem 290: 29167

Released	2015-10-28
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Mus musculus
Macromolecule	METHYLMALONIC ACIDURIA AND HOMOCYSTINURIA TYPE D HOMOLOG, MITOCHONDRIAL (protein)

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5A7N \| pdb_00005a7n	Download File View File

Crystal structure of human JMJD2A in complex with compound 43

Nowak, R., Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Williams, E., Riesebos, E., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.

(2016) J Med Chem 59: 1580

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.39 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	EDO, MN, SO4, VAO, ZN

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5A7O \| pdb_00005a7o	Download File View File

Crystal structure of human JMJD2A in complex with compound 42

Nowak, R., Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Pinkas, D.M., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.

(2016) J Med Chem 59: 1580

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	7WH, DMS, EDO, MN, SO4, ZN

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5A7P \| pdb_00005a7p	Download File View File

Crystal structure of human JMJD2A in complex with compound 36

Nowak, R., Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Kopec, J., Tallant, C., Froese, S., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.

(2016) J Med Chem 59: 1580

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	6Z1, DMS, EDO, MN, SO4, ZN

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5A7Q \| pdb_00005a7q	Download File View File

Crystal structure of human JMJD2A in complex with compound 30

Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Kopec, J., Dixon-Clarke, S., MacKenzie, A., Nowak, R., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.

(2016) J Med Chem 59: 1580

Released	2016-01-13
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	CL, EDO, KCH, MN, ZN

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5A7S \| pdb_00005a7s	Download File View File

Crystal structure of human JMJD2A in complex with compound 44

Nowak, R., Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Kopec, J., Tallant, C., Froese, S., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.

(2016) J Med Chem 59: 1580

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	DMS, EDO, MN, S2X, ZN

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5A7W \| pdb_00005a7w	Download File View File

Crystal structure of human JMJD2A in complex with compound 35

Nowak, R., Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Kopec, J., Tallant, C., Froese, S., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.

(2016) J Med Chem 59: 1580

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	35M, DMS, EDO, MN, SO4, ZN

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5A80 \| pdb_00005a80	Download File View File

Crystal structure of human JMJD2A in complex with compound 40

Nowak, R., Velupillai, S., Krojer, T., Gileadi, C., Johansson, C., Korczynska, M., Le, D.D., Younger, N., Gregori-Puigjane, E., Tumber, A., Iwasa, E., Pollock, S.B., Ortiz Torres, I., Kopec, J., Tallant, C., Froese, S., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Shoichet, B.K., Fujimori, D.G., Oppermann, U.

(2016) J Med Chem 59: 1580

Released	2016-01-13
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 4A (protein)
Unique Ligands	9CJ, EDO, MN, SO4, ZN

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5IN3 \| pdb_00005in3	Download File View File

Crystal structure of glucose-1-phosphate bound nucleotidylated human galactose-1-phosphate uridylyltransferase

Kopec, J., McCorvie, T., Tallant, C., Velupillai, S., Shrestha, L., Fitzpatrick, F., Patel, D., Chalk, R., Burgess-Brown, N., von Delft, F., Arrowsmith, C., Edwards, A., Bountra, C., Yue, W.W.

(2016) Hum Mol Genet 25: 2234-2244

Released	2016-03-30
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Homo sapiens
Macromolecule	Galactose-1-phosphate uridylyltransferase (protein)
Unique Ligands	EDO, G1P, H2U, ZN

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5L76 \| pdb_00005l76	Download File View File

Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase domain (in apo form)

Kopec, J., Pena, I.A., Rembeza, E., Strain-Damerell, C., Chalk, R., Borkowska, O., Goubin, S., Velupillai, S., Burgess-Brown, N., Arrowsmith, C., Edwards, A., Bountra, C., Arruda, P., Yue, W.W.

To be published

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.57 Å
Organisms	Homo sapiens
Macromolecule	Alpha-aminoadipic semialdehyde synthase, mitochondrial (protein)
Unique Ligands	EDO, PEG

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5L78 \| pdb_00005l78	Download File View File

Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase domain (in NAD+ bound form)

Kopec, J., Pena, I.A., Rembeza, E., Strain-Damerell, C., Chalk, R., Borkowska, O., Goubin, S., Velupillai, S., Burgess-Brown, N., Arrowsmith, C., Edwards, A., Bountra, C., Arruda, P., Yue, W.W.

To be published

Released	2017-05-10
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Homo sapiens
Macromolecule	Alpha-aminoadipic semialdehyde synthase, mitochondrial (protein)
Unique Ligands	EDO, NAD

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5LF8 \| pdb_00005lf8	Download File View File

Human Nucleoside diphosphate-linked moiety X motif 17 (NUDT17)

Mathea, S., Tallant, C., Salah, E., Wang, D., Velupillai, S., Nowak, R., Oerum, S., Krojer, T., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Huber, K., Structural Genomics Consortium (SGC)

To be published

Released	2017-08-16
Method	X-RAY DIFFRACTION 2.56 Å
Organisms	Homo sapiens
Macromolecule	Nucleoside diphosphate-linked moiety X motif 17 (protein)
Unique Ligands	EMC, PO4

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5MKV \| pdb_00005mkv	Download File View File

Crystal Structure of Human Dihydropyrimidinease-like 2 (DPYSL2A)/Collapsin Response Mediator Protein (CRMP2) residues 13-516

Sethi, R., Zheng, Y., Krojer, T., Velupillai, S., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Ahmed, A.A., von Delft, F.

(2018) Nat Commun 9: 476-476

Released	2017-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Dihydropyrimidinase-related protein 2 (protein)
Unique Ligands	EDO

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5MLE \| pdb_00005mle	Download File View File

Crystal Structure of Human Dihydropyrimidinease-like 2 (DPYSL2A)/Collapsin Response Mediator Protein (CRMP2 13-516) Mutant Y479E/Y499E

Sethi, R., Zheng, Y., Talon, R., Velupillai, S., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Ahmed, A.A., von Delft, F.

(2018) Nat Commun 9: 476-476

Released	2017-02-22
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Dihydropyrimidinase-related protein 2 (protein)
Unique Ligands	EDO, NI, PEG

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5MP0 \| pdb_00005mp0	Download File View File

Human m7GpppN-mRNA Hydrolase (DCP2, NUDT20) Catalytic Domain

Mathea, S., Salah, E., Velupillai, S., Tallant, C., Pike, A.C.W., Bushell, S.R., Faust, B., Wang, D., Burgess-Brown, N., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Knapp, S., Huber, K.

To be published

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.63 Å
Organisms	Homo sapiens
Macromolecule	m7GpppN-mRNA hydrolase (protein)
Unique Ligands	EDO

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5NLB \| pdb_00005nlb	Download File View File

Crystal structure of human CUL3 N-terminal domain bound to KEAP1 BTB and 3-box

Adamson, R., Krojer, T., Pinkas, D.M., Bartual, S.G., Burgess-Brown, N.A., Borkowska, O., Chalk, R., Newman, J.A., Kopec, J., Dixon-Clarke, S.E., Mathea, S., Sethi, R., Velupillai, S., Mackinnon, S., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Bullock, A.

(2023) Free Radic Biol Med 204: 215-225

Released	2017-04-19
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens
Macromolecule	Cullin-3 (protein) Kelch-like ECH-associated protein 1 (protein)

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5O1N \| pdb_00005o1n	Download File View File

Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase domain with N-[(2S)-2-Pyrrolidinylmethyl]-trifluoromethanesulfonamide bound

Kopec, J., Rembeza, E., Pena, I.A., Strain-Damerell, C., Goubin, S., Sethi, R., Velupillai, S., Talon, R., Collins, P., Krojer, T., McLaughlin, M., Burgess-Brown, N., Arrowsmith, C., Edwards, A., Bountra, C., Brennan, P., von Delft, F., Arruda, P., Yue, W.W.

To be published

Released	2017-05-31
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	Alpha-aminoadipic semialdehyde synthase, mitochondrial (protein)
Unique Ligands	9H8, DMS, EDO, PEG

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5O1O \| pdb_00005o1o	Download File View File

Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase domain with proline bound.

Kopec, J., Rembeza, E., Pena, I.A., Mathea, S., Velupillai, S., Strain-Damerell, C., Goubin, S., Kupinska, K., Talon, R., Collins, P., Krojer, T., Burgess-Brown, N., Arrowsmith, C., Edwards, A., Bountra, C., von Delft, F., Arruda, P., Yue, W.W.

To be published

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Alpha-aminoadipic semialdehyde synthase, mitochondrial (protein)
Unique Ligands	EDO, PRO

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5O1P \| pdb_00005o1p	Download File View File

Crystal structure of human aminoadipate semialdehyde synthase, saccharopine dehydrogenase.

Kopec, J., Rembeza, E., Pena, I.A., Williams, E., Velupillai, S., Kupinska, K., Strain-Damerell, C., Goubin, S., Talon, R., Collins, P., Krojer, T., Burgess-Brown, N., Arrowsmith, C., Edwards, A., Bountra, C., von Delft, F., Arruda, P., Yue, W.W.

To be published

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Alpha-aminoadipic semialdehyde synthase, mitochondrial (protein)
Unique Ligands	DMS, EDO