RCSB PDB: Search

1EBF \| pdb_00001ebf	Download File View File

HOMOSERINE DEHYDROGENASE FROM S. CEREVISIAE COMPLEX WITH NAD+

DeLaBarre, B., Thompson, P.R., Wright, G.D., Berghuis, A.M.

(2000) Nat Struct Biol 7: 238-244

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HOMOSERINE DEHYDROGENASE (protein)
Unique Ligands	NA, NAD

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1EBU \| pdb_00001ebu	Download File View File

HOMOSERINE DEHYDROGENASE COMPLEX WITH NAD ANALOGUE AND L-HOMOSERINE

DeLaBarre, B., Thompson, P.R., Wright, G.D., Berghuis, A.M.

(2000) Nat Struct Biol 7: 238-244

Released	2000-03-08
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	HOMOSERINE DEHYDROGENASE (protein)
Unique Ligands	HSE, NA, NDA

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1Q7G \| pdb_00001q7g	Download File View File

Homoserine Dehydrogenase in complex with suicide inhibitor complex NAD-5-hydroxy-4-Oxonorvaline

Jacques, S.L., Mirza, I.A., Ejim, L., Koteva, K., Hughes, D.W., Green, K., Kinach, R., Honek, J.F., Lai, H.K., Berghuis, A.M., Wright, G.D.

(2003) Chem Biol 10: 989-995

Released	2003-10-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Homoserine dehydrogenase (protein)
Unique Ligands	NA, NHO

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1TVE \| pdb_00001tve	Download File View File

Homoserine Dehydrogenase in complex with 4-(4-hydroxy-3-isopropylphenylthio)-2-isopropylphenol

Ejim, L., Mirza, I.A., Capone, C., Nazi, I., Jenkins, S., Chee, G.L., Berghuis, A.M., Wright, G.D.

(2004) Bioorg Med Chem 12: 3825-3830

Released	2004-07-13
Method	X-RAY DIFFRACTION 3 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Homoserine dehydrogenase (protein)
Unique Ligands	178

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2B61 \| pdb_00002b61	Download File View File

Crystal Structure of Homoserine Transacetylase

Mirza, I.A., Nazi, I., Korczynska, M., Wright, G.D., Berghuis, A.M.

(2005) Biochemistry 44: 15768-15773

Released	2005-11-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Haemophilus influenzae
Macromolecule	Homoserine O-acetyltransferase (protein)

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2GMW \| pdb_00002gmw	Download File View File

Crystal Structure of D,D-heptose 1.7-bisphosphate phosphatase from E. Coli.

Zhang, K., DeLeon, G., Wright, G.D., Junop, M.S.

(2010) Biochemistry 49: 1033-1041

Released	2007-04-10
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	D,D-heptose 1,7-bisphosphate phosphatase (protein)
Unique Ligands	ZN

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2HW2 \| pdb_00002hw2	Download File View File

Crystal structure of Rifampin ADP-ribosyl transferase in complex with Rifampin

Baysarowich, J., Wright, G.D., Junop, M.

(2008) Proc Natl Acad Sci U S A 105: 4886-4891

Released	2007-07-31
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Mycolicibacterium smegmatis
Macromolecule	Rifampin ADP-ribosyl transferase (protein)
Unique Ligands	GLY, RFP

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2XDO \| pdb_00002xdo	Download File View File

Structure of the Tetracycline degrading Monooxygenase TetX2 from Bacteroides thetaiotaomicron

Volkers, G., Palm, G.J., Wright, G.D., Hinrichs, W.

(2011) FEBS Lett 585: 1061

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.09 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	FAD, SO4

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2Y6Q \| pdb_00002y6q	Download File View File

Structure of the TetX monooxygenase in complex with the substrate 7- Iodtetracycline

Volkers, G., Palm, G.J., Weiss, M.S., Wright, G.D., Hinrichs, W.

(2011) FEBS Lett 585: 1061

Released	2011-03-23
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	FAD, I7T, SO4

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2Y6R \| pdb_00002y6r	Download File View File

Structure of the TetX monooxygenase in complex with the substrate 7- chlortetracycline

Volkers, G., Palm, G.J., Weiss, M.S., Wright, G.D., Hinrichs, W.

(2011) FEBS Lett 585: 1061

Released	2011-03-23
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Bacteroides thetaiotaomicron
Macromolecule	TETX2 PROTEIN (protein)
Unique Ligands	CTC, FAD, SO4

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3DHO \| pdb_00003dho	Download File View File

Structure of Streptogramin Acetyltransferase in Complex with an Inhibitor

Roderick, S.L., Pesaresi, A., Wright, G.D.

To be published

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Enterococcus faecium
Macromolecule	Streptogramin A acetyltransferase (protein)
Unique Ligands	B2M, DMS, FMT

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3JYY \| pdb_00003jyy	Download File View File

SeMet LinB complexed with PPi

Morar, M., Wright, G.D.

(2009) Structure 17: 1649-1659

Released	2009-11-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Enterococcus faecium
Macromolecule	Lincosamide nucleotidyltransferase (protein)
Unique Ligands	MG, PPV

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3JZ0 \| pdb_00003jz0	Download File View File

LinB complexed with clindamycin and AMPCPP

Morar, M., Wright, G.D.

(2009) Structure 17: 1649-1659

Released	2009-11-03
Method	X-RAY DIFFRACTION 2 Å
Organisms	Enterococcus faecium
Macromolecule	Lincosamide nucleotidyltransferase (protein)
Unique Ligands	APC, CLY, MG

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3SE7 \| pdb_00003se7	Download File View File

ancient VanA

Wright, G.D., Morar, M.

(2011) Nature 477: 457-461

Released	2011-09-14
Method	X-RAY DIFFRACTION 3.07 Å
Macromolecule	VanA (protein)
Unique Ligands	ATP, MG

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3TYK \| pdb_00003tyk	Download File View File

Crystal structure of aminoglycoside phosphotransferase APH(4)-Ia

Stogios, P.J., Shabalin, I.G., Shakya, T., Evdokmova, E., Fan, Y., Chruszcz, M., Minor, W., Wright, G.D., Savchenko, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

(2011) J Biological Chem 286: 1966-1975

Released	2011-10-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Escherichia coli
Macromolecule	Hygromycin-B 4-O-kinase (protein)
Unique Ligands	CL, HY0

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4DBX \| pdb_00004dbx	Download File View File

Crystal structure of aminoglycoside phosphotransferase APH(2")-ID/APH(2")-IVA

Stogios, P.J., Minasov, G., Tan, K., Nocek, B., Singer, A.U., Evdokimova, E., Egorova, E., Di Leo, R., Li, H., Shakya, T., Wright, G.D., Savchenko, A., Anderson, W.F., Midwest Center for Structural Genomics (MCSG)

(2011) Chem Biol 18: 1591-1601

Released	2012-02-01
Method	X-RAY DIFFRACTION 2.004 Å
Organisms	Enterococcus casseliflavus
Macromolecule	APH(2")-ID (protein)

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4DFU \| pdb_00004dfu	Download File View File

Inhibition of an antibiotic resistance enzyme: crystal structure of aminoglycoside phosphotransferase APH(2")-ID/APH(2")-IVA in complex with kanamycin inhibited with quercetin

Stogios, P.J., Minasov, G., Dong, A., Evdokimova, E., Egorova, E., Di Leo, R., Li, H., Shakya, T., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2011) Chem Biol 18: 1591-1601

Released	2012-02-08
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Enterococcus casseliflavus
Macromolecule	APH(2")-Id (protein)
Unique Ligands	CL, KAN, QUE

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4EJ7 \| pdb_00004ej7	Download File View File

Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, ATP-bound

Stogios, P.J., Minasov, G., Tan, K., Evdokimova, E., Egorova, O., Di Leo, R., Shakya, T., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) Biochem J 454: 191-200

Released	2012-04-18
Method	X-RAY DIFFRACTION 2.29 Å
Organisms	Acinetobacter baumannii AYE
Macromolecule	Aminoglycoside 3'-phosphotransferase AphA1-IAB (protein)
Unique Ligands	ATP, CA, PEG

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4FEU \| pdb_00004feu	Download File View File

Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor anthrapyrazolone SP600125

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) Biochem J 454: 191-200

Released	2012-06-20
Method	X-RAY DIFFRACTION 2.37 Å
Organisms	Acinetobacter baumannii AYE
Macromolecule	Aminoglycoside 3'-phosphotransferase AphA1-IAB (protein)
Unique Ligands	537, ACT, KAN

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4FEV \| pdb_00004fev	Download File View File

Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor pyrazolopyrimidine PP1

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) Biochem J 454: 191-200

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.89 Å
Organisms	Acinetobacter baumannii AYE
Macromolecule	Aminoglycoside 3'-phosphotransferase AphA1-IAB (protein)
Unique Ligands	ACT, KAN, NA, PP1

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4FEW \| pdb_00004few	Download File View File

Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor pyrazolopyrimidine PP2

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) Biochem J 454: 191-200

Released	2012-06-20
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Acinetobacter baumannii AYE
Macromolecule	Aminoglycoside 3'-phosphotransferase AphA1-IAB (protein)
Unique Ligands	ACT, CL, KAN, NA, PEG, PP2

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4FEX \| pdb_00004fex	Download File View File

Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor tyrphostin AG1478

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) Biochem J 454: 191-200

Released	2012-06-20
Method	X-RAY DIFFRACTION 2.71 Å
Organisms	Acinetobacter baumannii AYE
Macromolecule	Aminoglycoside 3'-phosphotransferase AphA1-IAB (protein)
Unique Ligands	0TO, ACT, KAN, NA

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4GKH \| pdb_00004gkh	Download File View File

Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor 1-NA-PP1

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Todorovic, N., Capretta, A., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) Biochem J 454: 191-200

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.863 Å
Organisms	Acinetobacter baumannii AYE
Macromolecule	Aminoglycoside 3'-phosphotransferase AphA1-IAB (protein)
Unique Ligands	0J9, ACT, CL, KAN, NA, PEG

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4GKI \| pdb_00004gki	Download File View File

Crystal structure of the aminoglycoside phosphotransferase APH(3')-Ia, with substrate kanamycin and small molecule inhibitor 1-NM-PP1

Stogios, P.J., Evdokimova, E., Wawrzak, Z., Minasov, G., Egorova, O., Di Leo, R., Shakya, T., Spanogiannopoulos, P., Todorovic, N., Capretta, A., Wright, G.D., Savchenko, A., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2013) Biochem J 454: 191-200

Released	2012-09-05
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Acinetobacter baumannii AYE
Macromolecule	Aminoglycoside 3'-phosphotransferase AphA1-IAB (protein)
Unique Ligands	0JN, ACT, CL, KAN, NA, PEG

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4WQK \| pdb_00004wqk	Download File View File

Crystal structure of aminoglycoside nucleotidylyltransferase ANT(2")-Ia, apo form

Cox, G., Stogios, P.J., Savchenko, A., Wright, G.D., Anderson, W.F., Center for Structural Genomics of Infectious Diseases (CSGID)

(2015) mBio 6:

Released	2014-11-12
Method	X-RAY DIFFRACTION 1.482 Å
Organisms	Klebsiella pneumoniae
Macromolecule	2''-aminoglycoside nucleotidyltransferase (protein)
Unique Ligands	CL, GOL, IPA, MG

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1EBF | pdb_00001ebf

1EBU | pdb_00001ebu

1Q7G | pdb_00001q7g

1TVE | pdb_00001tve

2B61 | pdb_00002b61

2GMW | pdb_00002gmw

2HW2 | pdb_00002hw2

2XDO | pdb_00002xdo

2Y6Q | pdb_00002y6q

2Y6R | pdb_00002y6r

3DHO | pdb_00003dho

3JYY | pdb_00003jyy

3JZ0 | pdb_00003jz0

3SE7 | pdb_00003se7

3TYK | pdb_00003tyk

4DBX | pdb_00004dbx

4DFU | pdb_00004dfu

4EJ7 | pdb_00004ej7

4FEU | pdb_00004feu

4FEV | pdb_00004fev

4FEW | pdb_00004few

4FEX | pdb_00004fex

4GKH | pdb_00004gkh

4GKI | pdb_00004gki

4WQK | pdb_00004wqk