RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Beddoe, T."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 109 Structures.

Refinements

Structure Determination Methodology

experimental (109)

Scientific Name of Source Organism

	Homo sapiens (63)
	Mus musculus (11)
	Epstein-Barr virus (strain B95-8) (8)
	Escherichia coli (6)
	Mycolicibacterium smegmatis MC2 155 (6)
	Bordetella pertussis (5)
	Mycolicibacterium paratuberculosis (strain ATCC BAA-968 / K-10) (5)
	Legionella pneumophila subsp. pneumophila str. Philadelphia 1 (3)
	Montipora efflorescens (3)
	Plasmodium falciparum 3D7 (3)

More...

Taxonomy

	Eukaryota (79)
	Bacteria (30)
	Duplodnaviria (15)
	Eukaryota (eukaryotes) (6)

Experimental Method

X-RAY DIFFRACTION (109)

Polymer Entity Type

Protein (109)

Refinement Resolution (Å)

	1.0 - 1.5 (7)
	1.5 - 2.0 (25)
	2.0 - 2.5 (40)
	2.5 - 3.0 (23)
	3.0 - 3.5 (13)
	3.5 - 4.0 (1)

Release Date

	2000 - 2004 (12)
	2005 - 2009 (33)
	2010 - 2014 (49)
	2015 - 2019 (8)
	2020 - 2024 (7)

Enzyme Classification Name

	Transferases (13)
	Oxidoreductases (3)
	Hydrolases (5)
	Isomerases (1)
	Ligases (1)
	Lyases (1)

Membrane Protein Annotation

OPM (1)

Symmetry Type

	Asymmetric (89)
	Cyclic (21)
	Dihedral (3)

SCOP Classification

	All beta proteins (60)
	Alpha and beta proteins (a+b) (43)
	Artifacts (42)
	Alpha and beta proteins (a/b) (5)
	All alpha proteins (1)

AllSelected

1 to 25 of 109 Structures

Page 1 of 5

Sort by

Explore in 3D

1MOU \| pdb_00001mou	Download File View File

Crystal structure of Coral pigment

Prescott, M., Ling, M., Beddoe, T., Oakley, A.J., Dove, S., Hoegh-Guldberg, O., Devenish, R.J., Rossjohn, J.

(2003) Structure 11: 275-284

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Montipora efflorescens
Macromolecule	GFP-like non-fluorescent chromoprotein (protein)
Unique Ligands	IOD

Explore in 3D

1MOV \| pdb_00001mov	Download File View File

Crystal structure of Coral protein mutant

Prescott, M., Ling, M., Beddoe, T., Oakley, A.J., Dove, S., Hoegh-Guldberg, O., Devenish, R.J., Rossjohn, J.

(2003) Structure 11: 275-284

Released	2003-04-08
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Montipora efflorescens
Macromolecule	GFP-like non-fluorescent chromoprotein (protein)
Unique Ligands	IOD

Explore in 3D

1PY9 \| pdb_00001py9	Download File View File

The crystal structure of an autoantigen in multiple sclerosis

Clements, C.S., Reid, H.H., Beddoe, T., Tynan, F.E., Perugini, M.A., Johns, T.G., Bernard, C.C., Rossjohn, J.

(2003) Proc Natl Acad Sci U S A 100: 11059-11064

Released	2003-09-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Mus musculus
Macromolecule	Myelin-oligodendrocyte glycoprotein (protein)
Unique Ligands	SO4

Explore in 3D

1S9W \| pdb_00001s9w	Download File View File

Crystal Structure Analysis of NY-ESO-1 epitope, SLLMWITQC, in complex with HLA-A2

Webb, A.I., Dunstone, M.A., Chen, W., Aguilar, M.I., Chen, Q., Chang, L., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Rossjohn, J., Purcell, A.W.

(2004) J Biological Chem 279: 23438-23446

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) NY-ESO-1 peptide (protein)
Unique Ligands	SO4

Explore in 3D

1S9X \| pdb_00001s9x	Download File View File

Crystal Structure Analysis of NY-ESO-1 epitope analogue, SLLMWITQA, in complex with HLA-A2

Webb, A.I., Dunstone, M.A., Chen, W., Aguilar, M.I., Chen, Q., Chang, L., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Rossjohn, J., Purcell, A.W.

(2004) J Biological Chem 279: 23438-23446

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) NY-ESO-1 peptide analogue S9A (protein)
Unique Ligands	SO4

Explore in 3D

1S9Y \| pdb_00001s9y	Download File View File

Crystal Structure Analysis of NY-ESO-1 epitope analogue, SLLMWITQS, in complex with HLA-A2

Webb, A.I., Dunstone, M.A., Chen, W., Aguilar, M.I., Chen, Q., Chang, L., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Rossjohn, J., Purcell, A.W.

(2004) J Biological Chem 279: 23438-23446

Released	2004-09-28
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, A-2 alpha chain (protein) NY-ESO-1 peptide analogue S9S (protein)
Unique Ligands	SO4

Explore in 3D

1SY6 \| pdb_00001sy6	Download File View File

Crystal Structure of CD3gammaepsilon Heterodimer in Complex with OKT3 Fab Fragment

Kjer-Nielsen, L., Dunstone, M.A., Kostenko, L., Ely, L.K., Beddoe, T., Misfud, N.A., Purcell, A.W., Brooks, A.G., McCluskey, J., Rossjohn, J.

(2004) Proc Natl Acad Sci U S A 101: 7675-7680

Released	2004-05-25
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens Mus musculus
Macromolecule	OKT3 Fab heavy chain (protein) OKT3 Fab light chain (protein) T-cell surface glycoprotein CD3 gamma/epsilon chain (protein)

Explore in 3D

1SYS \| pdb_00001sys	Download File View File

Crystal structure of HLA, B*4403, and peptide EEPTVIKKY

Zernich, D., Purcell, A.W., Macdonald, W.A., Kjer-Nielsen, L., Ely, L.K., Laham, N., Crockford, T., Mifsud, N.A., Tait, B.D., Holdsworth, R., Brooks, A.G., Bottomley, S.P., Beddoe, T., Peh, C.A., Rossjohn, J., McCluskey, J.

(2004) J Exp Medicine 200: 13-24

Released	2004-10-19
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) Sorting nexin 5 (protein) leukocyte antigen (HLA) class I molecule (protein)

Explore in 3D

1SYV \| pdb_00001syv	Download File View File

HLA-B*4405 complexed to the dominant self ligand EEFGRAYGF

(2004) J Exp Medicine 200: 13-24

Released	2004-10-19
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) MHC class I antigen (protein) major histocompatibility complex, class II, DR alpha (protein)

Explore in 3D

1T0M \| pdb_00001t0m	Download File View File

Conformational switch in polymorphic H-2K molecules containing an HSV peptide

Webb, A.I., Borg, N.A., Dunstone, M.A., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Carbone, F.R., Bottomley, S.P., Purcell, A.W., Rossjohn, J.

(2004) J Immunol 173: 402-409

Released	2004-11-23
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

Explore in 3D

1T0N \| pdb_00001t0n	Download File View File

Conformational switch in polymorphic H-2K molecules containing an HSV peptide

Webb, A.I., Borg, N.A., Dunstone, M.A., Kjer-Nielsen, L., Beddoe, T., McCluskey, J., Carbone, F.R., Bottomley, S.P., Purcell, A.W., Rossjohn, J.

(2004) J Immunol 173: 402-409

Released	2004-11-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human herpesvirus 1 (strain F) Mus musculus
Macromolecule	Beta-2-microglobulin (protein) Glycoprotein B (protein) H-2 class I histocompatibility antigen, K-B alpha chain (protein)

Explore in 3D

1UIS \| pdb_00001uis	Download File View File

The 2.0 crystal structure of eqFP611, a far-red fluorescent protein from the sea anemone Entacmaea quadricolor

Petersen, J., Wilmann, P.G., Beddoe, T., Oakley, A.J., Devenish, R.J., Prescott, M., Rossjohn, J.

(2003) J Biological Chem 278: 44626-44631

Released	2003-10-21
Method	X-RAY DIFFRACTION 2 Å
Organisms	Entacmaea quadricolor
Macromolecule	red fluorescent protein FP611 (protein)
Unique Ligands	ACY, CA

Explore in 3D

1ZHK \| pdb_00001zhk	Download File View File

Crystal structure of HLA-B*3501 presenting 13-mer EBV antigen LPEPLPQGQLTAY

Tynan, F.E., Borg, N.A., Miles, J.J., Beddoe, T., El-Hassen, D., Silins, S.L., van Zuylen, W.J., Purcell, A.W., Kjer-Nielsen, L., McCluskey, J., Burrows, S.R., Rossjohn, J.

(2005) J Biological Chem 280: 23900-23909

Released	2005-05-17
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBV-peptide LPEPLPQGQLTAY (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein)

Explore in 3D

1ZHL \| pdb_00001zhl	Download File View File

Crystal structure of HLA-B*3508 presenting 13-mer EBV antigen LPEPLPQGQLTAY

Tynan, F.E., Borg, N.A., Miles, J.J., Beddoe, T., El-Hassen, D., Silins, S.L., van Zuylen, W.J., Purcell, A.W., Kjer-Nielsen, L., McCluskey, J., Burrows, S.R., Rossjohn, J.

(2005) J Biological Chem 280: 23900-23909

Released	2005-05-17
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBV-peptide LPEPLPQGQLTAY (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein)

Explore in 3D

2AK4 \| pdb_00002ak4	Download File View File

Crystal Structure of SB27 TCR in complex with HLA-B*3508-13mer peptide

Tynan, F.E., Burrows, S.R., Buckle, A.M., Clements, C.S., Borg, N.A., Miles, J.J., Beddoe, T., Whisstock, J.C., Wilce, M.C., Silins, S.L., Burrows, J.M., Kjer-Nielsen, L., Konstenko, L., Purcell, A.W., McCluskey, J., Rossjohn, J.

(2005) Nat Immunol 6: 1114-1122

Released	2005-10-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBV peptide LPEPLPQGQLTAY (protein) HLA-B35 variant (protein) SB27 T cell receptor alpha chain (protein) SB27 T cell receptor beta chain (protein)
Unique Ligands	IOD

Explore in 3D

2ARL \| pdb_00002arl	Download File View File

The 2.0 angstroms crystal structure of a pocilloporin at pH 3.5: the structural basis for the linkage between color transition and halide binding

Wilmann, P.G., Battad, J., Beddoe, T., Olsen, S., Smith, S.C., Dove, S., Devenish, R.J., Rossjohn, J., Prescott, M.

(2006) Photochem Photobiol 82: 359-366

Released	2006-09-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Montipora efflorescens
Macromolecule	GFP-like non-fluorescent chromoprotein (protein)
Unique Ligands	ACY, CL, IOD

Explore in 3D

2ESV \| pdb_00002esv	Download File View File

Structure of the HLA-E-VMAPRTLIL/KK50.4 TCR complex

Hoare, H.L., Rossjohn, J.

(2006) Nat Immunol 7: 256-264

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens Human cytomegalovirus (strain AD169)
Macromolecule	Beta-2-microglobulin (protein) HLA class I histocompatibility antigen, alpha chain E (protein) KK50.4 T cell receptor alpha chain (protein) KK50.4 T cell receptor beta chain (protein) VMAPRTLIL peptide from CMV gpUL40 (protein)
Unique Ligands	IOD

Explore in 3D

2EYR \| pdb_00002eyr	Download File View File

A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition

Kjer-Nielsen, L., Borg, N.A.

(2006) J Exp Medicine 203: 661-673

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	NKT12 (protein)

Explore in 3D

2EYS \| pdb_00002eys	Download File View File

A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition

Kjer-Nielsen, L., Borg, N.A.

(2006) J Exp Medicine 203: 661-673

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Homo sapiens
Macromolecule	NKT15 (protein)
Unique Ligands	ACY

Explore in 3D

2EYT \| pdb_00002eyt	Download File View File

A structural basis for selection and cross-species reactivity of the semi-invariant NKT cell receptor in CD1d/glycolipid recognition

Kjer-Nielsen, L., Borg, N.A.

(2006) J Exp Medicine 203: 661-673

Released	2006-03-21
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	NKT15 (protein)

Explore in 3D

2GRV \| pdb_00002grv	Download File View File

Crystal Structure of LpqW

Marland, Z., Rossjohn, J.

(2006) J Mol Biology 359: 983-997

Released	2006-07-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mycolicibacterium smegmatis MC2 155
Macromolecule	LpqW (protein)

Explore in 3D

2IY9 \| pdb_00002iy9	Download File View File

Crystal structure of the A-subunit of the AB5 toxin from E. coli

Paton, A.W., Beddoe, T., Thorpe, C.M., Whisstock, J.C., Wilce, M.C.J., Rossjohn, J., Talbot, U.M., Paton, J.C.

(2006) Nature 443: 548

Released	2006-10-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	SUBA (protein)

Explore in 3D

2NW2 \| pdb_00002nw2	Download File View File

Crystal structure of ELS4 TCR at 1.4A

Tynan, F.E., Reid, H.H., Rossjohn, J.

(2007) Nat Immunol 8: 268-276

Released	2007-02-27
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens
Macromolecule	ELS4 TCR alpha chain (protein) ELS4 TCR beta chain (protein)

Explore in 3D

2NW3 \| pdb_00002nw3	Download File View File

Crystal structure of HLA-B*3508 presenting EBV peptide EPLPQGQLTAY at 1.7A

Tynan, F.E., Reid, H.H., Rossjohn, J.

(2007) Nat Immunol 8: 268-276

Released	2007-02-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBV peptide EPLPQGQLTAY (protein) HLA class I histocompatibility antigen, B-35 alpha chain (protein)

Explore in 3D

2NX5 \| pdb_00002nx5	Download File View File

Crystal structure of ELS4 TCR bound to HLA-B*3501 presenting EBV peptide EPLPQGQLTAY at 1.7A

Tynan, F.E., Reid, H.H., Rossjohn, J.

(2007) Nat Immunol 8: 268-276

Released	2007-02-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Epstein-Barr virus (strain B95-8) Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) EBV peptide, EPLPQGQLTAY (protein) ELS4 TCR alpha chain (protein) ELS4 TCR beta chain (protein) HLA-B35 (protein)

1 to 25 of 109 Structures

Page 1 of 5

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1MOU | pdb_00001mou

1MOV | pdb_00001mov

1PY9 | pdb_00001py9

1S9W | pdb_00001s9w

1S9X | pdb_00001s9x

1S9Y | pdb_00001s9y

1SY6 | pdb_00001sy6

1SYS | pdb_00001sys

1SYV | pdb_00001syv

1T0M | pdb_00001t0m

1T0N | pdb_00001t0n

1UIS | pdb_00001uis

1ZHK | pdb_00001zhk

1ZHL | pdb_00001zhl

2AK4 | pdb_00002ak4

2ARL | pdb_00002arl

2ESV | pdb_00002esv

2EYR | pdb_00002eyr

2EYS | pdb_00002eys

2EYT | pdb_00002eyt

2GRV | pdb_00002grv

2IY9 | pdb_00002iy9

2NW2 | pdb_00002nw2

2NW3 | pdb_00002nw3

2NX5 | pdb_00002nx5