RCSB PDB: Search

2VXY \| pdb_00002vxy	Download File View File

The structure of FTsZ from Bacillus subtilis at 1.7A resolution

Barynin, V.V., Baker, P.J., Rice, D.W., Sedelnikova, S.E., Haydon, D.J., Stokes, N.R., Ure, R., Galbraith, G., Bennett, J.M., Brown, D.R., Heal, J.R., Sheridan, J.M., Aiwale, S.T., Chauhan, P.K., Srivastava, A., Taneja, A., Collins, I., Errington, J., Czaplewski, L.G.

(2008) Science 321: 1673

Released	2008-09-30
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bacillus subtilis
Macromolecule	CELL DIVISION PROTEIN FTSZ (protein)
Unique Ligands	CIT, K

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4Z6H \| pdb_00004z6h	Download File View File

Crystal structure of BRD9 bromodomain in complex with a valerolactam quinolone ligand

Tallant, C., Structural Genomics Consortium (SGC), Clark, P.G.K., Vieira, L.C.C., Krojer, T., Nunez-Alonso, G., Picaud, S., Fedorov, O., Dixon, D.J., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Brennan, P.E., Knapp, S.

(2015) Angew Chem Int Ed Engl 54: 6217-6221

Released	2015-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 9 (protein)
Unique Ligands	4L2

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4Z6I \| pdb_00004z6i	Download File View File

Crystal structure of BRD9 bromodomain in complex with a substituted valerolactam quinolone ligand

Tallant, C., Structural Genomics Consortium (SGC), Clark, P.G.K., Vieira, L.C.C., Newman, J.A., Krojer, T., Nunez-Alonso, G., Picaud, S., Fedorov, O., Dixon, D.J., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Brennan, P.E., Knapp, S.

(2015) Angew Chem Int Ed Engl 54: 6217-6221

Released	2015-05-20
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 9 (protein)
Unique Ligands	4L3

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4ZQL \| pdb_00004zql	Download File View File

Crystal structure of TRIM24 with 3,4-dimethoxy-N-(6-(4-methoxyphenoxy)-1,3-dimethyl-2-oxo-2,3-dihydro-1H-benzo[d]imidazol-5-yl)benzenesulfonamide inhibitor

Tallant, C., Structural Genomics Consortium (SGC), Clark, P.G.K., Vieira, L.C.C., Krojer, T., Nunez-Alonso, G., Picaud, S., Fedorov, O., Dixon, D.J., von Delft, F., Arrowsmith, C.H., Edwards, A.M., Bountra, C., Brennan, P.E., Knapp, S.

To be published

Released	2015-06-17
Method	X-RAY DIFFRACTION 1.79 Å
Organisms	Homo sapiens
Macromolecule	Transcription intermediary factor 1-alpha (protein)
Unique Ligands	1PE, 4QH, DMS, SO4, ZN

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5F2S \| pdb_00005f2s	Download File View File

Crystal structure of human KDM4A in complex with compound 15

Le Bihan, Y.-V., Dempster, S., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.08 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5TZ, CL, DMS, EDO, ZN

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5F2W \| pdb_00005f2w	Download File View File

Crystal structure of human KDM4A in complex with compound 16

Le Bihan, Y.-V., Dempster, S., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5UP, DMS, EDO, ZN

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5F32 \| pdb_00005f32	Download File View File

Crystal structure of human KDM4A in complex with compound 40

Le Bihan, Y.-V., Dempster, S., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5V7, DMS, EDO, GOL, ZN

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5F37 \| pdb_00005f37	Download File View File

Crystal structure of human KDM4A in complex with compound 58

Le Bihan, Y.-V., Dempster, S., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	DMS, EDO, N5J, ZN

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5F39 \| pdb_00005f39	Download File View File

Crystal structure of human KDM4A in complex with compound 37

Le Bihan, Y.-V., Dempster, S., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.65 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5UB, DMS, ZN

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5F3C \| pdb_00005f3c	Download File View File

Crystal structure of human KDM4A in complex with compound 52d

Le Bihan, Y.-V., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.06 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5U8, CL, DMS, GOL, ZN

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5F3E \| pdb_00005f3e	Download File View File

Crystal structure of human KDM4A in complex with compound 54a

Le Bihan, Y.-V., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5UO, DMS, GOL, ZN

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5F3G \| pdb_00005f3g	Download File View File

Crystal structure of human KDM4A in complex with compound 53a

Le Bihan, Y.-V., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5UL, CL, DMS, ZN

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5F3I \| pdb_00005f3i	Download File View File

Crystal structure of human KDM4A in complex with compound 54j

Le Bihan, Y.-V., Dempster, S., Westwood, I.M., van Montfort, R.L.M.

(2016) J Med Chem 59: 1388-1409

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.24 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5UJ, CL, DMS, GOL, ZN

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5F5A \| pdb_00005f5a	Download File View File

Crystal Structure of human JMJD2D complexed with KDOAM16

Krojer, T., Vollmar, M., Crawley, L., Bradley, A.R., Szykowska, A., Ruda, G.F., Yang, H., Burgess-Brown, N., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., Oppermann, U., von Delft, F., Structural Genomics Consortium (SGC)

(2016) J Med Chem 59: 1388-1409

Released	2015-12-16
Method	X-RAY DIFFRACTION 1.41 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	5V0, EDO, NI, SO4, ZN

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5F5C \| pdb_00005f5c	Download File View File

Crystal Structure of human JMJD2D complexed with KDOPP7

Krojer, T., Vollmar, M., Crawley, L., Bradley, A.R., Szykowska, A., Ruda, G.F., Yang, H., Burgess-Brown, N., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., Oppermann, U., von Delft, F., Structural Genomics Consortium (SGC)

(2016) J Med Chem 59: 1388-1409

Released	2015-12-30
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4D (protein)
Unique Ligands	5V3, EDO, NI, SO4, ZN

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5F5I \| pdb_00005f5i	Download File View File

Crystal Structure of human JMJD2A complexed with KDOOA011340

Krojer, T., Vollmar, M., Crawley, L., Szykowska, A., Gileadi, C., Johansson, C., England, K., Yang, H., Burgess-Brown, N., Brennan, P., Bountra, C., Arrowsmith, C.H., Edwards, A., Oppermann, U., von Delft, F., Structural Genomics Consortium (SGC)

(2016) J Med Chem 59: 1388-1409

Released	2015-12-30
Method	X-RAY DIFFRACTION 2.63 Å
Organisms	Homo sapiens
Macromolecule	Lysine-specific demethylase 4A (protein)
Unique Ligands	5V1, NI, SO4, ZN

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5FPL \| pdb_00005fpl	Download File View File

Crystal structure of human JARID1B in complex with CCT363901

Srikannathasan, V., Yann-Vai, L.B., Nowak, R., Johansson, C., Gileadi, C., von Delft, F., Arrowsmith, C.H., Bountra, C., Edwards, A., Brennan, P., Huber, K., Oppermann, U.

(2016) J Med Chem 59: 1388

Released	2016-01-20
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	LYSINE-SPECIFIC DEMETHYLASE 5B, LYSINE-SPECIFIC DEMETHYLASE 5B (protein)
Unique Ligands	DMS, EDO, MN, QAY, ZN

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5RS7 \| pdb_00005rs7	Download File View File

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000034618676

Correy, G.J., Young, I.D., Thompson, M.C., Fraser, J.S.

(2021) Sci Adv 7:

Released	2020-12-16
Method	X-RAY DIFFRACTION 1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	W4Y

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5RS8 \| pdb_00005rs8	Download File View File

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000001601

Correy, G.J., Young, I.D., Thompson, M.C., Fraser, J.S.

(2021) Sci Adv 7:

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.01 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	H35

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5RS9 \| pdb_00005rs9	Download File View File

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000007636250

Correy, G.J., Young, I.D., Thompson, M.C., Fraser, J.S.

(2021) Sci Adv 7:

Released	2020-12-16
Method	X-RAY DIFFRACTION 1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	W4V

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5RSB \| pdb_00005rsb	Download File View File

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000001674697

Correy, G.J., Young, I.D., Thompson, M.C., Fraser, J.S.

(2021) Sci Adv 7:

Released	2020-12-16
Method	X-RAY DIFFRACTION 1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	W4S

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5RSC \| pdb_00005rsc	Download File View File

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000003888754

Correy, G.J., Young, I.D., Thompson, M.C., Fraser, J.S.

(2021) Sci Adv 7:

Released	2020-12-16
Method	X-RAY DIFFRACTION 1.01 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	W5S

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5RSD \| pdb_00005rsd	Download File View File

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000000331945

Correy, G.J., Young, I.D., Thompson, M.C., Fraser, J.S.

(2021) Sci Adv 7:

Released	2020-12-16
Method	X-RAY DIFFRACTION 1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	1LQ

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5RSE \| pdb_00005rse	Download File View File

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000336438345

Correy, G.J., Young, I.D., Thompson, M.C., Fraser, J.S.

(2021) Sci Adv 7:

Released	2020-12-16
Method	X-RAY DIFFRACTION 1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	W5P

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5RSF \| pdb_00005rsf	Download File View File

PanDDA analysis group deposition -- Crystal structure of SARS-CoV-2 NSP3 macrodomain in complex with ZINC000026180281

Correy, G.J., Young, I.D., Thompson, M.C., Fraser, J.S.

(2021) Sci Adv 7:

Released	2020-12-16
Method	X-RAY DIFFRACTION 1 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	Non-structural protein 3 (protein)
Unique Ligands	W5M

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2VXY | pdb_00002vxy

4Z6H | pdb_00004z6h

4Z6I | pdb_00004z6i

4ZQL | pdb_00004zql

5F2S | pdb_00005f2s

5F2W | pdb_00005f2w

5F32 | pdb_00005f32

5F37 | pdb_00005f37

5F39 | pdb_00005f39

5F3C | pdb_00005f3c

5F3E | pdb_00005f3e

5F3G | pdb_00005f3g

5F3I | pdb_00005f3i

5F5A | pdb_00005f5a

5F5C | pdb_00005f5c

5F5I | pdb_00005f5i

5FPL | pdb_00005fpl

5RS7 | pdb_00005rs7

5RS8 | pdb_00005rs8

5RS9 | pdb_00005rs9

5RSB | pdb_00005rsb

5RSC | pdb_00005rsc

5RSD | pdb_00005rsd

5RSE | pdb_00005rse

5RSF | pdb_00005rsf