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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Chen, J.M."

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Search Summary

This query matches 38 Structures.

Refinements

Structure Determination Methodology

experimental (38)

Scientific Name of Source Organism

	Homo sapiens (10)
	Streptomyces argillaceus (8)
	Human immunodeficiency virus 1 (5)
	HIV-1 M:B_HXB2R (4)
	Deinococcus radiodurans (3)
	Hepacivirus hominis (3)
	synthetic construct (3)
	Pseudomonas aeruginosa (2)
	Pyricularia grisea (2)
	Mycobacterium tuberculosis (1)

Taxonomy

	Bacteria (14)
	Eukaryota (12)
	Riboviria (12)
	other sequences (3)

Experimental Method

	X-RAY DIFFRACTION (34)
	SOLUTION NMR (4)

Polymer Entity Type

	Protein (38)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (2)
	1.5 - 2.0 (9)
	2.0 - 2.5 (14)
	2.5 - 3.0 (6)
	3.0 - 3.5 (2)
	3.5 - 4.0 (1)

Release Date

	1995 - 1999 (3)
	2000 - 2004 (3)
	2005 - 2009 (10)
	2010 - 2014 (10)
	2015 - 2019 (12)

Enzyme Classification Name

	Hydrolases (13)
	Transferases (9)
	Lyases (2)

Symmetry Type

	Asymmetric (27)
	Cyclic (12)

SCOP Classification

	Alpha and beta proteins (a/b) (13)
	Alpha and beta proteins (a+b) (9)
	All beta proteins (5)
	Multi-domain proteins (alpha and beta) (7)
	Artifacts (6)

AllSelected

1 to 25 of 38 Structures

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1FLS \| pdb_00001fls	Download File View File

SOLUTION STRUCTURE OF THE CATALYTIC FRAGMENT OF HUMAN COLLAGENASE-3 (MMP-13) COMPLEXED WITH A HYDROXAMIC ACID INHIBITOR

Moy, F.J., Chanda, P.K., Chen, J.M., Cosmi, S., Edris, W., Levin, J.I., Powers, R.

(2000) J Mol Biology 302: 671-689

Released	2001-08-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	COLLAGENASE-3 (protein)
Unique Ligands	CA, WAY, ZN

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1FM1 \| pdb_00001fm1	Download File View File

SOLUTION STRUCTURE OF THE CATALYTIC FRAGMENT OF HUMAN COLLAGENASE-3 (MMP-13) COMPLEXED WITH A HYDROXAMIC ACID INHIBITOR

Moy, F.J., Chanda, P.K., Chen, J.M., Cosmi, S., Edris, W., Levin, J.I., Powers, R.

(2000) J Mol Biology 302: 671-689

Released	2001-08-15
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	COLLAGENASE-3 (protein)
Unique Ligands	CA, WAY, ZN

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1IDP \| pdb_00001idp	Download File View File

Crystal structure of scytalone dehydratase F162A mutant in the unligated state

Nakasako, M., Motoyama, T., Yamaguchi, I.

(2002) Acta Crystallogr D Biol Crystallogr 58: 148-150

Released	2003-04-08
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pyricularia grisea
Macromolecule	SCYTALONE DEHYDRATASE (protein)

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1ZXC \| pdb_00001zxc	Download File View File

Crystal structure of catalytic domain of TNF-alpha converting enzyme (TACE) with inhibitor

Levin, J.I., Chen, J.M., Laakso, L.M., Du, M., Schmid, J., Xu, W., Cummons, T., Xu, J., Zhang, Y., Jin, G., Cowling, R., Barone, D., Skotnicki, J.S.

(2005) Bioorg Med Chem Lett 15: 4345-4349

Released	2005-09-27
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Homo sapiens
Macromolecule	ADAM 17 (protein)
Unique Ligands	IH6, ZN

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2A8H \| pdb_00002a8h	Download File View File

Crystal structure of catalytic domain of TACE with Thiomorpholine Sulfonamide Hydroxamate inhibitor

Levin, J.I., Chen, J.M., Laakso, L.M., Du, M., Schmid, J., Xu, W., Cummons, T., Xu, J., Jin, G., Barone, D., Skotnicki, J.S.

(2006) Bioorg Med Chem Lett 16: 1605-1609

Released	2006-02-07
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	ADAM 17 (protein)
Unique Ligands	4NH, ZN

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2AWZ \| pdb_00002awz	Download File View File

Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5h)

Powers, J.P., Piper, D.E., Li, Y., Mayorga, V., Anzola, J., Chen, J.M., Jaen, J.C., Lee, G., Liu, J., Peterson, M.G., Tonn, G.R., Ye, Q., Walker, N.P., Wang, Z.

(2006) J Med Chem 49: 1034-1046

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Hepacivirus hominis
Macromolecule	Genome polyprotein (protein)
Unique Ligands	5H, SO4

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2AX0 \| pdb_00002ax0	Download File View File

Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5x)

Powers, J.P., Piper, D.E., Li, Y., Mayorga, V., Anzola, J., Chen, J.M., Jaen, J.C., Lee, G., Liu, J., Peterson, M.G., Tonn, G.R., Ye, Q., Walker, N.P., Wang, Z.

(2006) J Med Chem 49: 1034-1046

Released	2006-01-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Hepacivirus hominis
Macromolecule	Genome polyprotein (protein)
Unique Ligands	5X, SO4

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2AX1 \| pdb_00002ax1	Download File View File

Hepatitis C Virus NS5b RNA Polymerase in complex with a covalent inhibitor (5ee)

Powers, J.P., Piper, D.E., Li, Y., Mayorga, V., Anzola, J., Chen, J.M., Jaen, J.C., Lee, G., Liu, J., Peterson, M.G., Tonn, G.R., Ye, Q., Walker, N.P., Wang, Z.

(2006) J Med Chem 49: 1034-1046

Released	2006-01-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Hepacivirus hominis
Macromolecule	Genome polyprotein (protein)
Unique Ligands	5EE, SO4

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2I4D \| pdb_00002i4d	Download File View File

Crystal structure of WT HIV-1 protease with GS-8373

Hatada, M.

(2006) J Mol Biology 363: 635-647

Released	2007-08-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	QFI

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2I4U \| pdb_00002i4u	Download File View File

HIV-1 protease with TMC-126

Hatada, M.

(2006) J Mol Biology 363: 635-647

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	DJR

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2I4V \| pdb_00002i4v	Download File View File

HIV-1 protease I84V, L90M with TMC126

Hatada, M.

(2006) J Mol Biology 363: 635-647

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	DJR

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2I4W \| pdb_00002i4w	Download File View File

HIV-1 protease WT with GS-8374

Hatada, M.

(2006) J Mol Biology 363: 635-647

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	KGQ

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2I4X \| pdb_00002i4x	Download File View File

HIV-1 Protease I84V, L90M with GS-8374

Hatada, M.

(2006) J Mol Biology 363: 635-647

Released	2007-08-28
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	KGQ

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3AYK \| pdb_00003ayk	Download File View File

CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE COMPLEXED WITH CGS-27023A, NMR, MINIMIZED AVERAGE STRUCTURE

Powers, R., Moy, F.J.

(1999) Biochemistry 38: 7085-7096

Released	1999-06-07
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (COLLAGENASE) (protein)
Unique Ligands	CA, CGS, ZN

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3LAK \| pdb_00003lak	Download File View File

Crystal structure of HIV-1 reverse transcriptase in complex with N1-heterocycle pyrimidinedione non-nucleoside inhibitor

Lansdon, E.B., Mitchell, M.L.

(2010) Bioorg Med Chem Lett 20: 1585-1588

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV Reverse transcriptase (protein)
Unique Ligands	CL, KR1, SO4

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3LAL \| pdb_00003lal	Download File View File

Crystal structure of HIV-1 reverse transcriptase in complex with N1-ethyl pyrimidinedione non-nucleoside inhibitor

Lansdon, E.B., Mitchell, M.L.

(2010) Bioorg Med Chem Lett 20: 1589-1592

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV Reverse transcriptase (protein)
Unique Ligands	KRV, SO4

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3LAM \| pdb_00003lam	Download File View File

Crystal structure of HIV-1 reverse transcriptase in complex with N1-propyl pyrimidinedione non-nucleoside inhibitor

Lansdon, E.B., Mitchell, M.L.

(2010) Bioorg Med Chem Lett 20: 1589-1592

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.76 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV Reverse transcriptase (protein)
Unique Ligands	KRP, SO4

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3LAN \| pdb_00003lan	Download File View File

Crystal structure of HIV-1 reverse transcriptase in complex with N1-butyl pyrimidinedione non-nucleoside inhibitor

Lansdon, E.B., Mitchell, M.L.

(2010) Bioorg Med Chem Lett 20: 1589-1592

Released	2010-02-23
Method	X-RAY DIFFRACTION 2.55 Å
Organisms	HIV-1 M:B_HXB2R
Macromolecule	HIV Reverse transcriptase (protein)
Unique Ligands	KBT, SO4

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3STD \| pdb_00003std	Download File View File

SCYTALONE DEHYDRATASE AND CYANOCINNOLINE INHIBITOR

Chen, J.M., Xu, S.L., Wawrzak, Z., Basarab, G.S., Jordan, D.B.

(1998) Biochemistry 37: 17735-17744

Released	1999-10-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Pyricularia grisea
Macromolecule	PROTEIN (SCYTALONE DEHYDRATASE) (protein)
Unique Ligands	CA, MQ0

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3U1Y \| pdb_00003u1y	Download File View File

Potent Inhibitors of LpxC for the Treatment of Gram-Negative Infections

Brown, M., Abramite, J., Liu, S.

(2012) J Med Chem 55: 914-923

Released	2012-01-04
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (protein)
Unique Ligands	03I, ZN

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3UHM \| pdb_00003uhm	Download File View File

UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase in complex with inhibitor

Montgomery, J., Liu, S.

(2012) J Med Chem 55: 1662-1670

Released	2012-02-01
Method	X-RAY DIFFRACTION 1.26 Å
Organisms	Pseudomonas aeruginosa
Macromolecule	UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase (protein)
Unique Ligands	EDO, GAI, RFN, ZN

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4AYK \| pdb_00004ayk	Download File View File

CATALYTIC FRAGMENT OF HUMAN FIBROBLAST COLLAGENASE COMPLEXED WITH CGS-27023A, NMR, 30 STRUCTURES

Powers, R., Moy, F.J.

(1999) Biochemistry 38: 7085-7096

Released	1999-06-05
Method	SOLUTION NMR
Organisms	Homo sapiens
Macromolecule	PROTEIN (COLLAGENASE) (protein)
Unique Ligands	CA, CGS, ZN

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4IO9 \| pdb_00004io9	Download File View File

Crystal structure of compound 4d bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Han, S., Marr, E.S.

(2013) Bioorg Med Chem Lett 23: 1727-1731

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	1F2, MG

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4IOA \| pdb_00004ioa	Download File View File

Crystal structure of compound 4e bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Han, S., Marr, E.S.

(2013) Bioorg Med Chem Lett 23: 1727-1731

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	1F3, MG

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4IOC \| pdb_00004ioc	Download File View File

Crystal structure of compound 4f bound to large ribosomal subunit (50S) from Deinococcus radiodurans

Han, S., Marr, E.S.

(2013) Bioorg Med Chem Lett 23: 1727-1731

Released	2013-03-06
Method	X-RAY DIFFRACTION 3.6 Å
Organisms	Deinococcus radiodurans
Macromolecule	Unique protein chains: 28 Unique nucleic acid chains: 2
Unique Ligands	1F4, MG

1 to 25 of 38 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1FLS | pdb_00001fls

1FM1 | pdb_00001fm1

1IDP | pdb_00001idp

1ZXC | pdb_00001zxc

2A8H | pdb_00002a8h

2AWZ | pdb_00002awz

2AX0 | pdb_00002ax0

2AX1 | pdb_00002ax1

2I4D | pdb_00002i4d

2I4U | pdb_00002i4u

2I4V | pdb_00002i4v

2I4W | pdb_00002i4w

2I4X | pdb_00002i4x

3AYK | pdb_00003ayk

3LAK | pdb_00003lak

3LAL | pdb_00003lal

3LAM | pdb_00003lam

3LAN | pdb_00003lan

3STD | pdb_00003std

3U1Y | pdb_00003u1y

3UHM | pdb_00003uhm

4AYK | pdb_00004ayk

4IO9 | pdb_00004io9

4IOA | pdb_00004ioa

4IOC | pdb_00004ioc