RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: Citation Author = "Chen, X."

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Help

NOT

Count

Add Subquery

Chemical Attributes

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 1,480 Structures.

Refinements

Structure Determination Methodology

experimental (1,480)

Scientific Name of Source Organism

	Homo sapiens (714)
	Severe acute respiratory syndrome coronavirus 2 (119)
	Mus musculus (109)
	synthetic construct (106)
	Human immunodeficiency virus 1 (66)
	Sus scrofa (47)
	Escherichia coli (37)
	Escherichia coli K-12 (30)
	Bos taurus (26)
	Arabidopsis thaliana (23)

More...

Taxonomy

	Eukaryota (993)
	Bacteria (329)
	Riboviria (279)
	other sequences (106)
	Duplodnaviria (29)
	Varidnaviria (8)
	Archaea (5)
	Monodnaviria (2)
	unclassified sequences (2)

Experimental Method

	X-RAY DIFFRACTION (1,064)
	ELECTRON MICROSCOPY (375)
	SOLUTION NMR (41)

Polymer Entity Type

	Protein (1,436)
	DNA (133)
	RNA (77)
	NA-hybrid (2)

Refinement Resolution (Å)

	1.0 - 1.5 (60)
	1.5 - 2.0 (336)
	2.0 - 2.5 (360)
	2.5 - 3.0 (287)
	3.0 - 3.5 (188)
	3.5 - 4.0 (110)
	4.0 - 4.5 (43)
	> 4.5 (55)

Release Date

	1995 - 1999 (34)
	2000 - 2004 (37)
	2005 - 2009 (81)
	2010 - 2014 (170)
	2015 - 2019 (318)
	2020 - 2024 (777)
	2025 - 2029 (63)

Enzyme Classification Name

	Transferases (333)
	Hydrolases (342)
	Oxidoreductases (111)
	Isomerases (40)
	Lyases (36)
	Ligases (24)
	Translocases (15)

Membrane Protein Annotation

	PDBTM (91)
	OPM (43)
	mpstruc (52)
	MemProtMD (46)

Symmetry Type

	Asymmetric (964)
	Cyclic (412)
	Dihedral (50)
	Icosahedral (19)
	Octahedral (14)
	Tetrahedral (3)

SCOP Classification

	All beta proteins (151)
	Alpha and beta proteins (a+b) (121)
	Alpha and beta proteins (a/b) (87)
	All alpha proteins (82)
	Artifacts (68)
	Small proteins (14)
	Multi-domain proteins (alpha and beta) (9)
	Coiled coil proteins (5)
	Membrane and cell surface proteins and peptides (3)

AllSelected

1 to 25 of 1,480 Structures

Page 1 of 60

Sort by

Explore in 3D

159D \| pdb_0000159d	Download File View File

SIDE BY SIDE BINDING OF TWO DISTAMYCIN A DRUGS IN THE MINOR GROOVE OF AN ALTERNATING B-DNA DUPLEX

Chen, X., Ramakrishnan, B., Rao, S.T., Sundaralingam, M.

(1994) Nat Struct Biol 1: 169-175

Released	1995-02-07
Method	X-RAY DIFFRACTION 1.8 Å
Macromolecule	DNA (5'-D(IPCPIPCPIPCPIPC)-3') (nucleic acid)
Unique Ligands	DMY, MG

Explore in 3D

1AUI \| pdb_00001aui	Download File View File

HUMAN CALCINEURIN HETERODIMER

Kissinger, C.R., Parge, H.E., Knighton, D.R., Pelletier, L.A., Lewis, C.T., Tempczyk, A., Villafranca, J.E.

(1995) Nature 378: 641-644

Released	1997-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	SERINE/THREONINE PHOSPHATASE 2B (protein)
Unique Ligands	CA, FE, ZN

Explore in 3D

1BF5 \| pdb_00001bf5	Download File View File

TYROSINE PHOSPHORYLATED STAT-1/DNA COMPLEX

Kuriyan, J., Zhao, Y., Chen, X., Vinkemeier, U., Jeruzalmi, D., Darnell Jr., J.E.

(1998) Cell 93: 827-839

Released	1998-08-12
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Homo sapiens
Macromolecule	SIGNAL TRANSDUCER AND ACTIVATOR OF TRANSCRIPTION 1-ALPHA/BETA (protein) DNA (5'-D(APCPAPGPTPTPTPCPCPCPGPTPAPAPAPTPG PC)-3') (nucleic acid) DNA (5'-D(TPGPCPAPTPTPTPAPCPGPGPGPAPAPAPCPT PG)-3') (nucleic acid)

Explore in 3D

1BIO \| pdb_00001bio	Download File View File

HUMAN COMPLEMENT FACTOR D IN COMPLEX WITH ISATOIC ANHYDRIDE INHIBITOR

Jing, H., Babu, Y.S., Moore, D., Kilpatrick, J.M., Liu, X.-Y., Volanakis, J.E., Narayana, S.V.L.

(1998) J Mol Biology 282: 1061-1081

Released	1999-06-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Homo sapiens
Macromolecule	COMPLEMENT FACTOR D (protein)
Unique Ligands	GOL, SOA

Explore in 3D

1C8J \| pdb_00001c8j	Download File View File

CRYSTAL STRUCTURE OF CYTOCHROME P450CAM MUTANT (F87W/Y96F)

Liu, Y., Jiang, F., Guo, Q., Chen, X., Jin, J., Sun, Y., Rao, Z.

To be published

Released	2001-05-09
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Pseudomonas putida
Macromolecule	CYTOCHROME P450-CAM (protein)
Unique Ligands	HEM

Explore in 3D

1C9S \| pdb_00001c9s	Download File View File

CRYSTAL STRUCTURE OF A COMPLEX OF TRP RNA-BINDING ATTENUATION PROTEIN WITH A 53-BASE SINGLE STRANDED RNA CONTAINING ELEVEN GAG TRIPLETS SEPARATED BY AU DINUCLEOTIDES

Antson, A.A., Dodson, E.J., Dodson, G.G., Greaves, R.B., Chen, X.-P., Gollnick, P.

(1999) Nature 401: 235-242

Released	1999-09-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	TRP RNA-BINDING ATTENUATION PROTEIN (protein) SINGLE STRANDED RNA (55-MER) (nucleic acid)
Unique Ligands	TRP

Explore in 3D

1DST \| pdb_00001dst	Download File View File

MUTANT OF FACTOR D WITH ENHANCED CATALYTIC ACTIVITY

Narayana, S.V.L., Volanakis, J.E.

(1995) J Biological Chem 270: 24399-24405

Released	1996-07-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	FACTOR D (protein)

Explore in 3D

1DSU \| pdb_00001dsu	Download File View File

HUMAN FACTOR D, COMPLEMENT ACTIVATING ENZYME

Narayana, S.V.L., Volanakis, J.E., Delucas, L.J.

(1994) J Mol Biology 235: 695-708

Released	1996-08-17
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	FACTOR D (protein)

Explore in 3D

1EGA \| pdb_00001ega	Download File View File

CRYSTAL STRUCTURE OF A WIDELY CONSERVED GTPASE ERA

Chen, X., Ji, X.

(1999) Proc Natl Acad Sci U S A 96: 8396-8401

Released	1999-07-12
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli
Macromolecule	PROTEIN (GTP-BINDING PROTEIN ERA) (protein)
Unique Ligands	SO4

Explore in 3D

1EKA \| pdb_00001eka	Download File View File

NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2

Chen, X., McDowell, J.A., Kierzek, R., Krugh, T.R., Turner, D.H.

(2000) Biochemistry 39: 8970-8982

Released	2000-11-13
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPAPGPUPGPCPUPC)-3') (nucleic acid)

Explore in 3D

1EKD \| pdb_00001ekd	Download File View File

NMR AND MOLECULAR MODELING REVEAL THAT DIFFERENT HYDROGEN BONDING PATTERNS ARE POSSIBLE FOR GU PAIRS: ONE HYDROGEN BOND FOR EACH GU PAIR IN R(GGCGUGCC)2 AND TWO FOR EACH GU PAIR IN R(GAGUGCUC)2

Chen, X., McDowell, J.A., Kierzek, R., Krugh, T.R., Turner, D.H.

(2000) Biochemistry 39: 8970-8982

Released	2000-11-13
Method	SOLUTION NMR
Macromolecule	RNA (5'-R(GPGPCPGPUPGPCPC)-3') (nucleic acid)

Explore in 3D

1EQ0 \| pdb_00001eq0	Download File View File

SOLUTION STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH MGAMPPCP

Shi, G., Yan, H.

(2001) J Biological Chem 276: 40274-40281

Released	2001-11-07
Method	SOLUTION NMR
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)

Explore in 3D

1EQM \| pdb_00001eqm	Download File View File

CRYSTAL STRUCTURE OF BINARY COMPLEX OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE WITH ADENOSINE-5'-DIPHOSPHATE

Xiao, B., Blaszczyk, J., Ji, X.

(2001) J Biological Chem 276: 40274-40281

Released	2001-04-05
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)
Unique Ligands	ADP, MG, PO4

Explore in 3D

1EX8 \| pdb_00001ex8	Download File View File

CRYSTAL STRUCTURE OF 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE COMPLEXED WITH HP4A, THE TWO-SUBSTRATE-MIMICKING INHIBITOR

Blaszczyk, J., Ji, X.

(2001) J Med Chem 44: 1364-1371

Released	2001-05-01
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)
Unique Ligands	A4P, CL, MG

Explore in 3D

1F9H \| pdb_00001f9h	Download File View File

CRYSTAL STRUCTURE OF THE TERNARY COMPLEX OF E. COLI HPPK(R92A) WITH MGAMPCPP AND 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN AT 1.50 ANGSTROM RESOLUTION

Blaszczyk, J., Ji, X.

(2003) Biochemistry 42: 1573-1580

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)
Unique Ligands	APC, CL, MG, PH2

Explore in 3D

1FDK \| pdb_00001fdk	Download File View File

CARBOXYLIC ESTER HYDROLASE (PLA2-MJ33 INHIBITOR COMPLEX)

Sundaralingam, M.

(1997) Biochemistry 36: 14186-14191

Released	1998-10-14
Method	X-RAY DIFFRACTION 1.91 Å
Organisms	Bos taurus
Macromolecule	PHOSPHOLIPASE A2 (protein)
Unique Ligands	CA, GLE

Explore in 3D

1FDP \| pdb_00001fdp	Download File View File

PROENZYME OF HUMAN COMPLEMENT FACTOR D, RECOMBINANT PROFACTOR D

Jing, H., Macon, K.J., Moore, D., Delucas, L.J., Volanakis, J.E., Narayana, S.V.L.

(1999) EMBO J 18: 804-814

Released	1999-12-03
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	PROENZYME OF COMPLEMENT FACTOR D (protein)

Explore in 3D

1FIO \| pdb_00001fio	Download File View File

CRYSTAL STRUCTURE OF YEAST T-SNARE PROTEIN SSO1

Munson, M., Chen, X., Cocina, A.E., Schultz, S.M., Hughson, F.M.

(2000) Nat Struct Biol 7: 894-902

Released	2000-10-11
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	SSO1 PROTEIN (protein)
Unique Ligands	ZN

Explore in 3D

1G3A \| pdb_00001g3a	Download File View File

STRUCTURE OF RNA DUPLEXES (CIGCGICG)2

Chen, X., Kierzek, R., Turner, D.H.

(2001) J Am Chem Soc 123: 1267-1274

Released	2001-08-01
Method	SOLUTION NMR
Macromolecule	5'-R(CP(IG)PCPGP(IC)PG)-3' (nucleic acid)

Explore in 3D

1G4C \| pdb_00001g4c	Download File View File

CRYSTAL STRUCTURE OF A COMPLEX OF HPPK(R92A) FROM E.COLI WITH MG2+ AT 1.65 ANGSTROM RESOLUTION

Blaszczyk, J., Ji, X.

(2003) Biochemistry 42: 1573-1580

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)
Unique Ligands	CL, MG

Explore in 3D

1GH2 \| pdb_00001gh2	Download File View File

Crystal structure of the catalytic domain of a new human thioredoxin-like protein

Jin, J., Chen, X., Guo, Q., Yuan, J., Qiang, B., Rao, Z.

(2002) Eur J Biochem 269: 2060-2068

Released	2001-05-01
Method	X-RAY DIFFRACTION 2.22 Å
Organisms	Homo sapiens
Macromolecule	THIOREDOXIN-LIKE PROTEIN (protein)

Explore in 3D

1GTN \| pdb_00001gtn	Download File View File

Structure of the trp RNA-binding attenuation protein (TRAP) bound to an RNA molecule containing 11 GAGCC repeats

Hopcroft, N.H., Wendt, A.L., Gollnick, P., Antson, A.A.

(2002) Acta Crystallogr D Biol Crystallogr 58: 615

Released	2002-04-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	TRP RNA-BINDING ATTENUATION PROTEIN (protein) (GAGCC)11G 56-NUCLEOTIDE RNA (nucleic acid)
Unique Ligands	TRP

Explore in 3D

1HFD \| pdb_00001hfd	Download File View File

HUMAN COMPLEMENT FACTOR D IN A P21 CRYSTAL FORM

Jing, H., Babu, Y.S., Moore, D., Kilpatrick, J.M., Liu, X.-Y., Volanakis, J.E., Narayana, S.V.L.

(1998) J Mol Biology 282: 1061-1081

Released	1999-06-22
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	COMPLEMENT FACTOR D (protein)

Explore in 3D

1HKA \| pdb_00001hka	Download File View File

6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE

Xiao, B., Shi, G., Chen, X., Yan, H., Ji, X.

(1999) Structure 7: 489-496

Released	1999-06-08
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)

Explore in 3D

1HQ2 \| pdb_00001hq2	Download File View File

CRYSTAL STRUCTURE OF A TERNARY COMPLEX OF E.COLI HPPK(R82A) WITH MGAMPCPP AND 6-HYDROXYMETHYL-7,8-DIHYDROPTERIN AT 1.25 ANGSTROM RESOLUTION

Blaszczyk, J., Ji, X.

(2003) Biochemistry 42: 1573-1580

Released	2003-04-15
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Escherichia coli
Macromolecule	6-HYDROXYMETHYL-7,8-DIHYDROPTERIN PYROPHOSPHOKINASE (protein)
Unique Ligands	ACT, APC, CL, MG, PH2

1 to 25 of 1,480 Structures

Page 1 of 60

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

159D | pdb_0000159d

1AUI | pdb_00001aui

1BF5 | pdb_00001bf5

1BIO | pdb_00001bio

1C8J | pdb_00001c8j

1C9S | pdb_00001c9s

1DST | pdb_00001dst

1DSU | pdb_00001dsu

1EGA | pdb_00001ega

1EKA | pdb_00001eka

1EKD | pdb_00001ekd

1EQ0 | pdb_00001eq0

1EQM | pdb_00001eqm

1EX8 | pdb_00001ex8

1F9H | pdb_00001f9h

1FDK | pdb_00001fdk

1FDP | pdb_00001fdp

1FIO | pdb_00001fio

1G3A | pdb_00001g3a

1G4C | pdb_00001g4c

1GH2 | pdb_00001gh2

1GTN | pdb_00001gtn

1HFD | pdb_00001hfd

1HKA | pdb_00001hka

1HQ2 | pdb_00001hq2