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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Haesaerts, S."

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Search Summary

This query matches 33 Structures.

Refinements

Structure Determination Methodology

experimental (33)

Scientific Name of Source Organism

	Lama glama (11)
	Staphylococcus aureus (8)
	Arabidopsis thaliana (7)
	Aliivibrio fischeri (5)
	Staphylococcus aureus subsp. aureus N315 (4)
	Vibrio cholerae O1 biovar El Tor str. N16961 (3)
	Escherichia coli (2)
	Escherichia coli (strain K12) (2)
	Vibrio cholerae (2)
	Aliivibrio fischeri ES114 (1)

More...

Taxonomy

	Bacteria (25)
	Eukaryota (18)
	Duplodnaviria (1)

Experimental Method

	X-RAY DIFFRACTION (31)
	SOLUTION NMR (2)

Polymer Entity Type

Protein (33)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (8)
	2.0 - 2.5 (9)
	2.5 - 3.0 (5)
	3.0 - 3.5 (8)

Release Date

	2005 - 2009 (6)
	2010 - 2014 (7)
	2015 - 2019 (5)
	2020 - 2024 (15)

Enzyme Classification Name

	Hydrolases (12)
	Lyases (7)
	Isomerases (2)
	Transferases (1)

Symmetry Type

	Cyclic (21)
	Dihedral (7)
	Asymmetric (5)

SCOP Classification

	All beta proteins (14)
	Artifacts (8)
	Multi-domain proteins (alpha and beta) (2)

AllSelected

1 to 25 of 33 Structures

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2KMT \| pdb_00002kmt	Download File View File

NMR solution structure of Vibrio fischeri CcdB

Zangger, K.

(2010) J Biological Chem 285: 5606-5613

Released	2009-12-01
Method	SOLUTION NMR
Organisms	Aliivibrio fischeri
Macromolecule	CcdB (protein)

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2MF2 \| pdb_00002mf2	Download File View File

Structural and biophysical characterization of the mRNA interferase SaMazF from Staphylococcus aureus.

Zorzini, V., Cheung, A., Loris, R., van Nuland, N.A.J.

(2014) Nucleic Acids Res 5: 157-160

Released	2014-05-21
Method	SOLUTION NMR
Organisms	Staphylococcus aureus
Macromolecule	mRNA interferase MazF (protein)

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3DD9 \| pdb_00003dd9	Download File View File

Structure of DocH66Y dimer

Garcia-Pino, A., Loris, R.

(2014) J Biological Chem 289: 34013-34023

Released	2009-06-09
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Punavirus P1
Macromolecule	Death on curing protein (protein)

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3G7Z \| pdb_00003g7z	Download File View File

CcdB dimer in complex with two C-terminal CcdA domains

De Jonge, N., Loris, R., Garcia-Pino, A., Buts, L.

(2009) Mol Cell 35: 154-163

Released	2009-08-11
Method	X-RAY DIFFRACTION 2.351 Å
Organisms	Escherichia coli Escherichia coli (strain K12)
Macromolecule	Cytotoxic protein ccdB (protein) Protein ccdA (protein)

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3HPW \| pdb_00003hpw	Download File View File

CcdB dimer in complex with one C-terminal CcdA domain

De Jonge, N., Loris, R., Garcia-Pino, A., Buts, L.

(2009) Mol Cell 35: 154-163

Released	2009-08-11
Method	X-RAY DIFFRACTION 1.452 Å
Organisms	Escherichia coli Escherichia coli (strain K12)
Macromolecule	Cytotoxic protein ccdB (protein) Protein ccdA (protein)
Unique Ligands	PEG, SO4

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3JRZ \| pdb_00003jrz	Download File View File

CcdBVfi-FormII-pH5.6

De Jonge, N., Buts, L., Loris, R.

(2010) J Biological Chem 285: 5606-5613

Released	2009-12-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Aliivibrio fischeri
Macromolecule	CcdB (protein)

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3JSC \| pdb_00003jsc	Download File View File

CcdBVfi-FormI-pH7.0

De Jonge, N., Buts, L., Loris, R.

(2010) J Biological Chem 285: 5606-5613

Released	2009-12-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Aliivibrio fischeri
Macromolecule	CcdB (protein)
Unique Ligands	SO4

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3TCJ \| pdb_00003tcj	Download File View File

CcdB dimer from V. fisheri in complex with one C-terminal domain of F-plasmid CcdA

De Jonge, N., Loris, R.

(2013) J Am Chem Soc 135: 1288-1294

Released	2012-08-15
Method	X-RAY DIFFRACTION 1.93 Å
Organisms	Aliivibrio fischeri Escherichia coli O157:H7
Macromolecule	CcdB (protein) Protein CcdA (protein)
Unique Ligands	ACT

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4ELY \| pdb_00004ely	Download File View File

CCDBVFI:GYRA14EC

De Jonge, N., Simic, R., Buts, L., Haesaerts, S., Roelants, K., Garcia-Pino, A., Sterckx, Y., De Greve, H., Lah, J., Loris, R.

(2012) Mol Microbiol 84: 965-978

Released	2012-05-30
Method	X-RAY DIFFRACTION 1.932 Å
Organisms	Aliivibrio fischeri Shigella flexneri
Macromolecule	CcdB (protein) DNA gyrase subunit A (protein)
Unique Ligands	CL, SO4

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4ELZ \| pdb_00004elz	Download File View File

CCDBVFI:GYRA14VFI

De Jonge, N., Simic, M., Buts, L., Haesaerts, S., Roelants, K., Garcia-Pino, A., Sterckx, Y., De Greve, H., Lah, J., Loris, R.

(2012) Mol Microbiol 84: 965-978

Released	2012-05-30
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Aliivibrio fischeri ES114 Aliivibrio fischeri MJ11
Macromolecule	CcdB (protein) DNA gyrase subunit A (protein)
Unique Ligands	GOL

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4MZM \| pdb_00004mzm	Download File View File

MazF from S. aureus crystal form I, P212121, 2.1 A

Zorzini, V., Loris, R., van Nuland, N.A.J., Cheung, A.

(2014) Nucleic Acids Res 42: 6709-6725

Released	2014-05-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	mRNA interferase MazF (protein)

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4MZP \| pdb_00004mzp	Download File View File

MazF from S. aureus crystal form III, C2221, 2.7 A

Zorzini, V., Loris, R., van Nuland, N.A.J., Cheung, A.

(2014) Nucleic Acids Res 42: 6709-6725

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.702 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	MazF mRNA interferase (protein)

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4MZT \| pdb_00004mzt	Download File View File

MazF from S. aureus crystal form II, C2221, 2.3 A

Zorzini, V., Loris, R., van Nuland, N.A.J., Cheung, A.

(2014) Nucleic Acids Res 42: 6709-6725

Released	2014-05-21
Method	X-RAY DIFFRACTION 2.303 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	MazF mRNA interferase (protein)

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5J9I \| pdb_00005j9i	Download File View File

Crystal structure of the HigA2 antitoxin C-terminal domain

Hadzi, S., Loris, R.

(2017) Nucleic Acids Res 45: 4972-4983

Released	2017-04-05
Method	X-RAY DIFFRACTION 1.797 Å
Organisms	Vibrio cholerae
Macromolecule	Antitoxin igA-2 (protein)

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5JA8 \| pdb_00005ja8	Download File View File

Crystal structure of the HigB2 toxin in complex with Nb2

Hadzi, S., Loris, R.

(2017) Nucleic Acids Res 45: 4972-4983

Released	2017-04-05
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Lama glama Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Nanobody 2 (protein) Toxin HigB-2 (protein)
Unique Ligands	ACT, EDO, EPE, PDO, PO4

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5JA9 \| pdb_00005ja9	Download File View File

Crystal structure of the HigB2 toxin in complex with Nb6

Hadzi, S., Loris, R.

(2017) Nucleic Acids Res 45: 4972-4983

Released	2017-04-05
Method	X-RAY DIFFRACTION 1.849 Å
Organisms	Lama glama Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Nanobody 6 (protein) Toxin HigB-2 (protein)
Unique Ligands	EDO, SO4

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5JAA \| pdb_00005jaa	Download File View File

Crystal structure of the HigBA2 toxin-antitoxin complex

Hadzi, S., Loris, R.

(2017) Nucleic Acids Res 45: 4972-4983

Released	2017-04-05
Method	X-RAY DIFFRACTION 2.993 Å
Organisms	Vibrio cholerae O1 biovar El Tor str. N16961
Macromolecule	Antitoxin igA-2 (protein) Toxin HigB-2 (protein)

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5MJE \| pdb_00005mje	Download File View File

Crystal structure of the HigB2 toxin in complex with Nb8

Hadzi, S., Loris, R.

(2017) Nucleic Acids Res 45: 4972-4983

Released	2017-04-05
Method	X-RAY DIFFRACTION 2.599 Å
Organisms	Lama glama Vibrio cholerae
Macromolecule	Cytotoxic translational repressor of toxin-antitoxin stability system (protein) Nanobody 8 (protein)
Unique Ligands	PEG, SO4

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8CJ5 \| pdb_00008cj5	Download File View File

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 A651V mutant with bound phosphate

Haesaerts, S., Loris, R., Larsen, P.

To be published

Released	2024-02-21
Method	X-RAY DIFFRACTION 3.00135289121 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoenolpyruvate carboxylase 1 (protein)
Unique Ligands	PO4

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8CJ8 \| pdb_00008cj8	Download File View File

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 mutant A651V in complex with L-malate

Haesaerts, S., Loris, R., Larsen, P.B.

To be published

Released	2024-02-21
Method	X-RAY DIFFRACTION 3.48991836749 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoenolpyruvate carboxylase 1 (protein)
Unique Ligands	CL, LMR

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8OJ9 \| pdb_00008oj9	Download File View File

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 free form

Haesaerts, S., Loris, R., Larsen, P.B.

To be published

Released	2023-04-12
Method	X-RAY DIFFRACTION 3.24638283547 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoenolpyruvate carboxylase 1 (protein)

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8OJE \| pdb_00008oje	Download File View File

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 in complex with L-malate

Haesaerts, S., Loris, R., Larsen, P.B.

To be published

Released	2023-05-31
Method	X-RAY DIFFRACTION 3.14239899937 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoenolpyruvate carboxylase 1 (protein)
Unique Ligands	CL, LMR, PEG

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8OJF \| pdb_00008ojf	Download File View File

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 with bound phosphate

Haesaerts, S., Loris, R., Larsen, P.B.

To be published

Released	2023-05-31
Method	X-RAY DIFFRACTION 3.0368376252 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoenolpyruvate carboxylase 1 (protein)
Unique Ligands	CL, PO4

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8OJQ \| pdb_00008ojq	Download File View File

Arabidopsis thaliana Phosphoenolpyruvate carboxylase PPC1 T778 mutant with bound phosphate

Haesaerts, S., Loris, R., Larsen, P.

To be published

Released	2024-04-03
Method	X-RAY DIFFRACTION 3.04938394081 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoenolpyruvate carboxylase 1 (protein)
Unique Ligands	PO4

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8OJZ \| pdb_00008ojz	Download File View File

Arabidopsis thaliana Phosphoenolpyruvate carboxylase 1 (PPC1) G678S mutant

Loris, R., Haesaerts, S., Larsen, P.B.

To be published

Released	2024-04-03
Method	X-RAY DIFFRACTION 3.24781103461 Å
Organisms	Arabidopsis thaliana
Macromolecule	Phosphoenolpyruvate carboxylase 1 (protein)
Unique Ligands	PO4

1 to 25 of 33 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2KMT | pdb_00002kmt

2MF2 | pdb_00002mf2

3DD9 | pdb_00003dd9

3G7Z | pdb_00003g7z

3HPW | pdb_00003hpw

3JRZ | pdb_00003jrz

3JSC | pdb_00003jsc

3TCJ | pdb_00003tcj

4ELY | pdb_00004ely

4ELZ | pdb_00004elz

4MZM | pdb_00004mzm

4MZP | pdb_00004mzp

4MZT | pdb_00004mzt

5J9I | pdb_00005j9i

5JA8 | pdb_00005ja8

5JA9 | pdb_00005ja9

5JAA | pdb_00005jaa

5MJE | pdb_00005mje

8CJ5 | pdb_00008cj5

8CJ8 | pdb_00008cj8

8OJ9 | pdb_00008oj9

8OJE | pdb_00008oje

8OJF | pdb_00008ojf

8OJQ | pdb_00008ojq

8OJZ | pdb_00008ojz