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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Momma, M."

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Paenibacillus sp. 598K (7)
	Niallia circulans (6)
	Lumbricus terrestris (5)
	Bombyx mori (4)
	Oryza sativa Japonica Group (4)
	Acidobacterium capsulatum ATCC 51196 (3)
	Sphingomonas sp. A1 (3)
	Streptococcus mutans (3)
	Bacillus subtilis (2)
	Streptomyces avermitilis MA-4680 = NBRC 14893 (2)

More...

Taxonomy

	Bacteria (28)
	Eukaryota (15)

Experimental Method

	X-RAY DIFFRACTION (42)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (19)
	2.0 - 2.5 (15)
	2.5 - 3.0 (6)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (7)
	2010 - 2014 (22)
	2015 - 2019 (9)
	2020 - 2024 (2)

Enzyme Classification Name

	Hydrolases (19)
	Transferases (15)

Symmetry Type

	Asymmetric (35)
	Cyclic (12)
	Dihedral (2)

SCOP Classification

	All beta proteins (8)
	Alpha and beta proteins (a/b) (5)
	Artifacts (2)

AllSelected

1 to 25 of 43 Structures

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1BAG \| pdb_00001bag	Download File View File

ALPHA-AMYLASE FROM BACILLUS SUBTILIS COMPLEXED WITH MALTOPENTAOSE

Fujimoto, Z., Mizuno, H., Takase, K., Doui, N.

(1998) J Mol Biology 277: 393-407

Released	1998-10-21
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus subtilis
Macromolecule	ALPHA-1,4-GLUCAN-4-GLUCANOHYDROLASE (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC, GLC

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1UA7 \| pdb_00001ua7	Download File View File

Crystal Structure Analysis of Alpha-Amylase from Bacillus Subtilis complexed with Acarbose

Kagawa, M., Fujimoto, Z., Momma, M., Takase, K., Mizuno, H.

(2003) J Bacteriol 185: 6981-6984

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.21 Å
Organisms	Bacillus subtilis
Macromolecule	Alpha-amylase (protein)
Unique Ligands	ACI, CA
Unique branched monosaccharides	BGC, G6D, GLC, GLD

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1UAS \| pdb_00001uas	Download File View File

Crystal structure of rice alpha-galactosidase

Fujimoto, Z., Kaneko, S., Momma, M., Kobayashi, H., Mizuno, H.

(2003) J Biological Chem 278: 20313-20318

Released	2003-07-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Oryza sativa
Macromolecule	alpha-galactosidase (protein)
Unique Ligands	GLA, GOL, PT, SO4

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2DRY \| pdb_00002dry	Download File View File

Crystal structure of the earthworm lectin C-terminal domain mutant

Suzuki, R., Fujimoto, Z.

(2007) J Biochem 141: 389-399

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lumbricus terrestris
Macromolecule	29-kDa galactose-binding lectin (protein)
Unique Ligands	PGE, SO4

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2DRZ \| pdb_00002drz	Download File View File

Crystal structure of the earthworm lectin C-terminal domain mutant in complex with lactose

Suzuki, R., Fujimoto, Z.

(2007) J Biochem 141: 389-399

Released	2007-02-06
Method	X-RAY DIFFRACTION 2.19 Å
Organisms	Lumbricus terrestris
Macromolecule	29-kDa galactose-binding lectin (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC, GAL

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2DS0 \| pdb_00002ds0	Download File View File

Crystal structure of the earthworm lectin C-terminal domain mutant in complex with 6'-sialyllactose

Suzuki, R., Fujimoto, Z.

(2007) J Biochem 141: 389-399

Released	2007-02-06
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lumbricus terrestris
Macromolecule	29-kDa galactose-binding lectin (protein)
Unique Ligands	SO4
Unique branched monosaccharides	BGC, GAL, SIA

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2RQF \| pdb_00002rqf	Download File View File

Solution structure of juvenile hormone binding protein from silkworm in complex with JH III

Suzuki, R., Fujimoto, Z., Shiotsuki, T., Momma, M., Tase, A., Yamazaki, T.

(2011) Sci Rep 1: 133-133

Released	2010-05-05
Method	SOLUTION NMR
Organisms	Bombyx mori
Macromolecule	Hemolymph juvenile hormone binding protein (protein)
Unique Ligands	JH3

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2ZBI \| pdb_00002zbi	Download File View File

Crystal structure of a bacterial cell-surface flagellin

Maruyama, Y.

(2008) Biochemistry 47: 1393-1402

Released	2008-02-05
Method	X-RAY DIFFRACTION 2 Å
Organisms	Sphingomonas sp. A1
Macromolecule	Flagellin homolog (protein)

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2ZQN \| pdb_00002zqn	Download File View File

Crystal structure of the earthworm R-type lectin C-half in complex with Lactose

Suzuki, R., Kuno, A., Hasegawa, T., Hirabayashi, J., Kasai, K., Momma, M., Fujimoto, Z.

(2009) Acta Crystallogr D Biol Crystallogr 65: 49-57

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Lumbricus terrestris
Macromolecule	29-kDa galactose-binding lectin (protein)
Unique Ligands	IMD, PO4
Unique branched monosaccharides	BGC, GAL

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2ZQO \| pdb_00002zqo	Download File View File

Crystal structure of the earthworm R-type lectin C-half in complex with GalNAc

Suzuki, R., Kuno, A., Hasegawa, T., Hirabayashi, J., Kasai, K., Momma, M., Fujimoto, Z.

(2009) Acta Crystallogr D Biol Crystallogr 65: 49-57

Released	2008-09-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Lumbricus terrestris
Macromolecule	29-kDa galactose-binding lectin (protein)
Unique Ligands	CD, IMD, NGA, PO4

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3A1Z \| pdb_00003a1z	Download File View File

Crystal structure of juvenile hormone binding protein from silkworm

Suzuki, R., Fujimoto, Z., Shiotsuki, T., Momma, M., Tase, A., Yamazaki, T.

(2013) PLoS One 8: e56261-e56261

Released	2010-04-28
Method	X-RAY DIFFRACTION 2.59 Å
Organisms	Bombyx mori
Macromolecule	Hemolymph juvenile hormone binding protein (protein)
Unique Ligands	MPD, ZN

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3A5V \| pdb_00003a5v	Download File View File

Crystal structure of alpha-galactosidase I from Mortierella vinacea

Fujimoto, Z., Kaneko, S., Kobayashi, H.

(2009) Biosci Biotechnol Biochem 73: 2360-2364

Released	2009-08-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Umbelopsis vinacea
Macromolecule	Alpha-galactosidase (protein)
Unique Ligands	1PG, TRS
Unique branched monosaccharides	BMA, MAN, NAG

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3AOS \| pdb_00003aos	Download File View File

Crystal structure of juvenile hormone binding protein from silkworm in complex with JH II

Fujimoto, Z., Suzuki, R., Shiotsuki, T., Momma, M., Yamazaki, T.

(2011) Sci Rep 1: 133-133

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bombyx mori
Macromolecule	Hemolymph juvenile hormone binding protein (protein)
Unique Ligands	JH2

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3AOT \| pdb_00003aot	Download File View File

Crystal structure of juvenile hormone binding protein from silkworm in its apo form

Fujimoto, Z., Suzuki, R., Shiotsuki, T., Momma, M., Yamazaki, T.

(2011) Sci Rep 1: 133-133

Released	2011-10-12
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Bombyx mori
Macromolecule	Hemolymph juvenile hormone binding protein (protein)
Unique Ligands	PEG, PG4, PGE

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3K8V \| pdb_00003k8v	Download File View File

Crysatl structure of a bacterial cell-surface flagellin N20C20

Maruyama, Y., Momma, M., Hashimoto, W., Murata, K.

To be published

Released	2010-10-06
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Sphingomonas sp. A1
Macromolecule	Flagellin homolog (protein)

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3K8W \| pdb_00003k8w	Download File View File

Crysatl structure of a bacterial cell-surface flagellin N20C45

Maruyama, Y., Momma, M., Hashimoto, W., Murata, K.

To be published

Released	2010-10-06
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sphingomonas sp. A1
Macromolecule	Flagellin homolog (protein)

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3VMN \| pdb_00003vmn	Download File View File

Crystal structure of dextranase from Streptococcus mutans

Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.

(2012) J Biological Chem 287: 19916-19926

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Streptococcus mutans
Macromolecule	Dextranase (protein)
Unique Ligands	PO4

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3VMO \| pdb_00003vmo	Download File View File

Crystal structure of dextranase from Streptococcus mutans in complex with isomaltotriose

Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.

(2012) J Biological Chem 287: 19916-19926

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Streptococcus mutans
Macromolecule	Dextranase (protein)
Unique Ligands	PO4
Unique branched monosaccharides	BGC, GLC

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3VMP \| pdb_00003vmp	Download File View File

Crystal structure of dextranase from Streptococcus mutans in complex with 4,5-epoxypentyl alpha-D-glucopyranoside

Suzuki, N., Fujimoto, Z., Kim, Y.M., Momma, M., Okuyama, M., Mori, H., Funane, K., Kimura, A.

(2012) J Biological Chem 287: 19916-19926

Released	2012-02-15
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Streptococcus mutans
Macromolecule	Dextranase (protein)
Unique Ligands	E5G, PO4

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3VNY \| pdb_00003vny	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum

Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Kaneko, S.

(2012) J Biological Chem 287: 14069-14077

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	beta-GLUCURONIDASE (protein)
Unique Ligands	GOL, PO4

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3VNZ \| pdb_00003vnz	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum in complex with D-glucuronic acid

Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Kaneko, S.

(2012) J Biological Chem 287: 14069-14077

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	beta-GLUCURONIDASE (protein)
Unique Ligands	BDP, GOL, PO4

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3VO0 \| pdb_00003vo0	Download File View File

Crystal structure of beta-glucuronidase from Acidobacterium capsulatum covalent-bonded with 2-deoxy-2-fluoro-D-glucuronic acid

Momma, M., Fujimoto, Z., Michikawa, M., Ichinose, H., Jongkees, S., Yoshida, M., Kotake, Y., Biely, P., Tsumuraya, Y., Withers, S., Kaneko, S.

(2012) J Biological Chem 287: 14069-14077

Released	2012-02-22
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Acidobacterium capsulatum ATCC 51196
Macromolecule	beta-Glucuronidase (protein)
Unique Ligands	DNF, GUF, GUZ, PO4

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3VUE \| pdb_00003vue	Download File View File

Crystal Structure of Rice Granule bound Starch Synthase I Catalytic Domain

Momma, M., Fujimoto, Z.

(2012) Biosci Biotechnol Biochem 76: 1591-1595

Released	2012-09-05
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Granule-bound starch synthase 1, chloroplastic/amyloplastic (protein)
Unique Ligands	SO4

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3VUF \| pdb_00003vuf	Download File View File

Crystal Structure of Rice Granule bound Starch Synthase I Catalytic Domain in Complex with ADP

Momma, M., Fujimoto, Z.

(2012) Biosci Biotechnol Biochem 76: 1591-1595

Released	2012-09-05
Method	X-RAY DIFFRACTION 3 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Granule-bound starch synthase 1, chloroplastic/amyloplastic (protein)
Unique Ligands	ADP, SO4

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3W5M \| pdb_00003w5m	Download File View File

Crystal Structure of Streptomyces avermitilis alpha-L-rhamnosidase

Fujimoto, Z., Jackson, A., Michikawa, M., Maehara, T., Momma, M., Henrissat, B.F., Gilbert, H.J., Kaneko, S.

(2013) J Biological Chem 288: 12376-12385

Released	2013-03-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Streptomyces avermitilis MA-4680 = NBRC 14893
Macromolecule	Putative rhamnosidase (protein)
Unique Ligands	CA, TRS

1 to 25 of 43 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BAG | pdb_00001bag

1UA7 | pdb_00001ua7

1UAS | pdb_00001uas

2DRY | pdb_00002dry

2DRZ | pdb_00002drz

2DS0 | pdb_00002ds0

2RQF | pdb_00002rqf

2ZBI | pdb_00002zbi

2ZQN | pdb_00002zqn

2ZQO | pdb_00002zqo

3A1Z | pdb_00003a1z

3A5V | pdb_00003a5v

3AOS | pdb_00003aos

3AOT | pdb_00003aot

3K8V | pdb_00003k8v

3K8W | pdb_00003k8w

3VMN | pdb_00003vmn

3VMO | pdb_00003vmo

3VMP | pdb_00003vmp

3VNY | pdb_00003vny

3VNZ | pdb_00003vnz

3VO0 | pdb_00003vo0

3VUE | pdb_00003vue

3VUF | pdb_00003vuf

3W5M | pdb_00003w5m