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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Mori, K."

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Search Summary

This query matches 31 Structures.

Refinements

Structure Determination Methodology

experimental (31)

Scientific Name of Source Organism

	Homo sapiens (9)
	Escherichia coli K-12 (4)
	Klebsiella oxytoca (3)
	Parastagonospora nodorum SN15 (3)
	Aeromonas jandaei (2)
	Aspergillus flavus NRRL3357 (2)
	Bacillus sp. (in: firmicutes) (2)
	Heliothis virescens (2)
	Mus musculus (2)
	Streptomyces sp. JHA19 (2)

More...

Taxonomy

	Eukaryota (17)
	Bacteria (15)

Experimental Method

	X-RAY DIFFRACTION (30)
	ELECTRON MICROSCOPY (1)

Polymer Entity Type

Protein (31)

Refinement Resolution (Å)

	1.5 - 2.0 (11)
	2.0 - 2.5 (10)
	2.5 - 3.0 (4)
	3.0 - 3.5 (5)
	3.5 - 4.0 (1)

Release Date

	2005 - 2009 (2)
	2010 - 2014 (9)
	2015 - 2019 (9)
	2020 - 2024 (11)

Enzyme Classification Name

	Lyases (7)
	Oxidoreductases (2)
	Hydrolases (3)
	Transferases (2)

Membrane Protein Annotation

	PDBTM (2)
	OPM (2)
	MemProtMD (1)
	mpstruc (1)

Symmetry Type

	Asymmetric (21)
	Cyclic (9)
	Dihedral (6)

SCOP Classification

	Alpha and beta proteins (a/b) (7)
	All beta proteins (3)
	All alpha proteins (3)
	Artifacts (2)

AllSelected

1 to 25 of 31 Structures

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2D0O \| pdb_00002d0o	Download File View File

Structure of diol dehydratase-reactivating factor complexed with ADP and Mg2+

Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.

(2005) Structure 13: 1745-1754

Released	2006-02-28
Method	X-RAY DIFFRACTION 2 Å
Organisms	Klebsiella oxytoca
Macromolecule	diol dehydratase-reactivating factor large subunit (protein) diol dehydratase-reactivating factor small subunit (protein)
Unique Ligands	ADP, MG, SO4

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2D0P \| pdb_00002d0p	Download File View File

Structure of diol dehydratase-reactivating factor in nucleotide free form

Shibata, N., Mori, K., Hieda, N., Higuchi, Y., Yamanishi, M., Toraya, T.

(2005) Structure 13: 1745-1754

Released	2006-02-28
Method	X-RAY DIFFRACTION 3 Å
Organisms	Klebsiella oxytoca
Macromolecule	diol dehydratase-reactivating factor large subunit (protein) diol dehydratase-reactivating factor small subunit (protein)
Unique Ligands	CA, SO4

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3ABO \| pdb_00003abo	Download File View File

Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-Cbl and ethanolamine

Shibata, N.

(2010) J Biological Chem 285: 26484-26493

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Ethanolamine ammonia-lyase heavy chain (protein) Ethanolamine ammonia-lyase light chain (protein)
Unique Ligands	B12, ETA, GOL, NA

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3ABQ \| pdb_00003abq	Download File View File

Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-Cbl and 2-amino-1-propanol

Shibata, N.

(2010) J Biological Chem 285: 26484-26493

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Escherichia coli K-12
Macromolecule	Ethanolamine ammonia-lyase heavy chain (protein) Ethanolamine ammonia-lyase light chain (protein)
Unique Ligands	2A1, B12, GOL

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3ABR \| pdb_00003abr	Download File View File

Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with CN-Cbl (substrate-free form)

Shibata, N.

(2010) J Biological Chem 285: 26484-26493

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Escherichia coli K-12
Macromolecule	Ethanolamine ammonia-lyase heavy chain (protein) Ethanolamine ammonia-lyase light chain (protein)
Unique Ligands	B12, GOL, NA

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3ABS \| pdb_00003abs	Download File View File

Crystal structure of ethanolamine ammonia-lyase from Escherichia coli complexed with adeninylpentylcobalamin and ethanolamine

Shibata, N.

(2010) J Biological Chem 285: 26484-26493

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Escherichia coli K-12
Macromolecule	Ethanolamine ammonia-lyase heavy chain (protein) Ethanolamine ammonia-lyase light chain (protein)
Unique Ligands	COY, ETA, GOL, SO4

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3AUJ \| pdb_00003auj	Download File View File

Structure of diol dehydratase complexed with glycerol

Yamanishi, M., Kinoshita, K., Fukuoka, M., Shibata, T., Tobimatsu, T., Toraya, T.

(2012) FEBS J 279: 793-804

Released	2012-02-22
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Klebsiella oxytoca
Macromolecule	Diol dehydrase alpha subunit (protein) Diol dehydrase beta subunit (protein) Diol dehydrase gamma subunit (protein)
Unique Ligands	B12, CA, GOL, PO4

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3FW4 \| pdb_00003fw4	Download File View File

Crystal structure of Siderocalin (NGAL, Lipocalin 2) complexed with Ferric Catechol

Clifton, M.C., Strong, R.K.

(2010) Nat Chem Biol 6: 602-609

Released	2010-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	CAQ, CL, FE, GOL, NA

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3FW5 \| pdb_00003fw5	Download File View File

Crystal structure of Siderocalin (NGAL, Lipocalin 2) complexed with Ferric 4-methyl-catechol

Clifton, M.C., Strong, R.K.

(2010) Nat Chem Biol 6: 602-609

Released	2010-05-05
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	Neutrophil gelatinase-associated lipocalin (protein)
Unique Ligands	CL, FE, GOL, MCT, NA

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3WGB \| pdb_00003wgb	Download File View File

Crystal structure of aeromonas jandaei L-allo-threonine aldolase

Qin, H.M., Imai, F.L., Miyakawa, T., Kataoka, M., Okai, M., Ohtsuka, J., Hou, F., Nagata, K., Shimizu, S., Tanokura, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1695-1703

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.6 Å
Organisms	Aeromonas jandaei
Macromolecule	L-allo-threonine aldolase (protein)
Unique Ligands	GLY, PLG

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3WGC \| pdb_00003wgc	Download File View File

Aeromonas jandaei L-allo-threonine aldolase H128Y/S292R double mutant

Qin, H.M., Imai, F.L., Miyakawa, T., Kataoka, M., Okai, M., Ohtsuka, J., Hou, F., Nagata, K., Shimizu, S., Tanokura, M.

(2014) Acta Crystallogr D Biol Crystallogr 70: 1695-1703

Released	2014-07-09
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Aeromonas jandaei
Macromolecule	L-allo-threonine aldolase (protein)
Unique Ligands	PLG

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4YNT \| pdb_00004ynt	Download File View File

Crystal structure of Aspergillus flavus FAD glucose dehydrogenase

Yoshida, H., Sakai, G., Kojima, K., Kamitori, S., Sode, K.

(2015) Sci Rep 5: 13498-13498

Released	2015-09-02
Method	X-RAY DIFFRACTION 1.78 Å
Organisms	Aspergillus flavus NRRL3357
Macromolecule	Glucose oxidase, putative (protein)
Unique Ligands	FDA

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4YNU \| pdb_00004ynu	Download File View File

Crystal structure of Aspergillus flavus FADGDH in complex with D-glucono-1,5-lactone

Yoshida, H., Sakai, G., Kojima, K., Kamitori, S., Sode, K.

(2015) Sci Rep 5: 13498-13498

Released	2015-09-02
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Aspergillus flavus NRRL3357
Macromolecule	Glucose oxidase, putative (protein)
Unique Ligands	FAD, LGC

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5T1E \| pdb_00005t1e	Download File View File

Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase

Yoshida, H., Shimasaki, T., Kamitori, S., Sode, K.

(2017) Sci Rep 7: 2790-2790

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Parastagonospora nodorum SN15
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ACY, FAD

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5T1F \| pdb_00005t1f	Download File View File

Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase mutant Asn56Ala

Yoshida, H., Shimasaki, T., Kamitori, S., Sode, K.

(2017) Sci Rep 7: 2790-2790

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Parastagonospora nodorum SN15
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ACY, FAD

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5U7Q \| pdb_00005u7q	Download File View File

Identification of A New Class of Potent Cdc7 Inhibitors Designed by Putative Pharmacophore Model: Synthesis and Biological Evaluation of 2,3-Dihydrothieno[3,2-d]pyrimidin-4(1H)-ones

Hoffman, I.D.

(2017) Bioorg Med Chem 25: 2133-2147

Released	2017-03-29
Method	X-RAY DIFFRACTION 3.15 Å
Organisms	Homo sapiens
Macromolecule	Rho-associated protein kinase 2 (protein)

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5U7R \| pdb_00005u7r	Download File View File

Identification of A New Class of Potent Cdc7 Inhibitors Designed by Putative Pharmacophore Model: Synthesis and Biological Evaluation of 2,3-Dihydrothieno[3,2-d]pyrimidin-4(1H)-ones

Hoffman, I.D., Skene, R.J.

(2017) Bioorg Med Chem 25: 2133-2147

Released	2017-03-29
Method	X-RAY DIFFRACTION 3.33 Å
Organisms	Homo sapiens
Macromolecule	Rho-associated protein kinase 2 (protein)
Unique Ligands	81G

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5XAO \| pdb_00005xao	Download File View File

Crystal structure of Phaeospaeria nodrum fructosyl peptide oxidase mutant Asn56Ala in complexes with sodium and chloride ions

Yoshida, H., Kamitori, S., Sode, K.

(2017) Sci Rep 7: 2790-2790

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Parastagonospora nodorum SN15
Macromolecule	Uncharacterized protein (protein)
Unique Ligands	ACY, CL, FAD, NA

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5YHS \| pdb_00005yhs	Download File View File

Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, apo form

Tanuma, M., Yamada, C., Arakawa, T., Higuchi, Y., Takegawa, K., Fushinobu, S.

(2018) Sci Rep 8: 12013-12013

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Bacillus sp. (in: firmicutes)
Macromolecule	Pyruvylated beta-D-galactosidase (protein)

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5YIF \| pdb_00005yif	Download File View File

Pyruvylated beta-D-galactosidase from Bacillus sp. HMA207, E163A mutant pyruvylated beta-D-galactose complex

Tanuma, M., Yamada, C., Arakawa, T., Higuchi, Y., Takegawa, K., Fushinobu, S.

(2018) Sci Rep 8: 12013-12013

Released	2018-08-29
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Bacillus sp. (in: firmicutes)
Macromolecule	Pyruvylated beta-D-galactosidase (protein)
Unique Ligands	8VR

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6KO5 \| pdb_00006ko5	Download File View File

Complex structure of Ghrelin receptor with Fab

Shiimura, Y., Horita, S., Asada, H., Hirata, K., Iwata, S., Kojima, M.

(2020) Nat Commun 11: 4160-4160

Released	2020-08-12
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Escherichia coli Homo sapiens Mus musculus
Macromolecule	Chimera of Soluble cytochrome b562 and Growth hormone secretagogue receptor type 1 (protein) Fab7881 Heavy Chain (protein) Fab7881 Light Chain (protein)
Unique Ligands	8QX

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6KS2 \| pdb_00006ks2	Download File View File

Structure of anti-Ghrelin receptor antibody

Shiimura, Y., Horita, S., Asada, H., Hirata, K., Iwata, S., Kojima, M.

(2020) Nat Commun 11: 4160-4160

Released	2020-08-12
Method	X-RAY DIFFRACTION 1.753 Å
Organisms	Mus musculus
Macromolecule	Fab7881 Heavy Chain (FabH) (protein) Fab7881 Light Chain (FabL) (protein)

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7BJU \| pdb_00007bju	Download File View File

Crystal structure of the ligand-binding domains of the heterodimer EcR/USP bound to the synthetic agonist BYI08346

Browning, C., McEwen, A.G., Billas, I.M.L.

(2021) J Pestic Sci 46: 88-100

Released	2021-04-07
Method	X-RAY DIFFRACTION 2.85 Å
Organisms	Heliothis virescens
Macromolecule	Ecdysone Receptor (protein) Ultraspiracle Protein (protein)
Unique Ligands	834, EPH, MG, PE8, PEG, PGE

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7BJV \| pdb_00007bjv	Download File View File

Crystal structure of the ligand-binding domains of the heterodimer EcR/USP bound to the synthetic agonist BYI09181

Browning, C., McEwen, A.G., Billas, I.M.L.

(2021) J Pestic Sci 46: 88-100

Released	2021-04-07
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Heliothis virescens
Macromolecule	Ecdysone Receptor (protein) Ultraspiracle protein (protein)
Unique Ligands	EPH, MG, PEG, U0H