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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Rack, J.G.M."

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Search Summary

This query matches 87 Structures.

Refinements

Structure Determination Methodology

experimental (87)

Scientific Name of Source Organism

	Homo sapiens (28)
	Rift Valley fever virus (8)
	Severe acute respiratory syndrome coronavirus 2 (7)
	Oryctolagus cuniculus (6)
	Ebola virus - Mayinga, Zaire, 1976 (5)
	Orthohantavirus puumalaense (5)
	Henipavirus nipahense (4)
	Mus musculus (4)
	Orthohantavirus hantanense (4)
	Ebola virus (3)

More...

Taxonomy

	Riboviria (57)
	Eukaryota (41)
	Bacteria (13)
	other sequences (2)

Experimental Method

	X-RAY DIFFRACTION (73)
	ELECTRON MICROSCOPY (14)

Polymer Entity Type

Protein (87)

Refinement Resolution (Å)

	1.5 - 2.0 (25)
	2.0 - 2.5 (21)
	2.5 - 3.0 (18)
	3.0 - 3.5 (5)
	3.5 - 4.0 (6)
	4.0 - 4.5 (2)
	> 4.5 (10)

Release Date

	2005 - 2009 (9)
	2010 - 2014 (6)
	2015 - 2019 (29)
	2020 - 2024 (43)

Enzyme Classification Name

	Hydrolases (3)
	Transferases (4)
	Isomerases (1)
	Lyases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (6)
	mpstruc (6)
	MemProtMD (4)

Symmetry Type

	Asymmetric (53)
	Cyclic (32)
	Dihedral (1)
	Icosahedral (1)

SCOP Classification

	All beta proteins (21)
	Alpha and beta proteins (a+b) (8)
	Artifacts (4)

AllSelected

1 to 25 of 87 Structures

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1XZ0 \| pdb_00001xz0	Download File View File

Crystal structure of CD1a in complex with a synthetic mycobactin lipopeptide

Zajonc, D.M., Crispin, M.D., Bowden, T.A., Young, D.C., Cheng, T.Y., Hu, J., Costello, C.E., Miller, M.J., Moody, D.B., Wilson, I.A.

(2005) Immunity 22: 209-219

Released	2005-03-01
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Homo sapiens
Macromolecule	Beta-2-microglobulin (protein) T-cell surface glycoprotein CD1a (protein)
Unique Ligands	JH0
Unique branched monosaccharides	FUC, NAG

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2VSK \| pdb_00002vsk	Download File View File

Hendra virus attachment glycoprotein in complex with human cell surface receptor ephrinB2

Bowden, T.A., Aricescu, A.R., Gilbert, R.J., Grimes, J.M., Jones, E.Y., Stuart, D.I.

(2008) Nat Struct Mol Biol 15: 567

Released	2008-05-20
Method	X-RAY DIFFRACTION 3.3 Å
Organisms	Henipavirus hendraense Homo sapiens
Macromolecule	EPHRIN-B2 (protein) HEMAGGLUTININ-NEURAMINIDASE (protein)

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2VSM \| pdb_00002vsm	Download File View File

Nipah virus attachment glycoprotein in complex with human cell surface receptor ephrinB2

Bowden, T.A., Aricescu, A.R., Gilbert, R.J., Grimes, J.M., Jones, E.Y., Stuart, D.I.

(2008) Nat Struct Mol Biol 15: 567

Released	2008-05-20
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Henipavirus nipahense Homo sapiens
Macromolecule	EPHRIN-B2 (protein) HEMAGGLUTININ-NEURAMINIDASE (protein)
Unique Ligands	IPA, NAG

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2VWD \| pdb_00002vwd	Download File View File

Nipah Virus Attachment Glycoprotein

Bowden, T.A., Crispin, M., Harvey, D.J., Aricescu, A.R., Grimes, J.M., Jones, E.Y., Stuart, D.I.

(2008) J Virol 82: 11628

Released	2008-10-07
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Henipavirus nipahense
Macromolecule	HEMAGGLUTININ-NEURAMINIDASE (protein)
Unique Ligands	CL, GBL, NAG

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2WAH \| pdb_00002wah	Download File View File

Crystal Structure of an IgG1 Fc Glycoform (Man9GlcNAc2)

Crispin, M., Bowden, T.A., Coles, C.H., Harlos, K., Aricescu, A.R., Harvey, D.J., Stuart, D.I., Jones, E.Y.

(2009) J Mol Biology 387: 1061

Released	2009-03-10
Method	X-RAY DIFFRACTION 2.51 Å
Organisms	Homo sapiens
Macromolecule	IG GAMMA-1 CHAIN C REGION (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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2WFO \| pdb_00002wfo	Download File View File

Crystal structure of Machupo virus envelope glycoprotein GP1

Bowden, T.A., Crispin, M., Graham, S.C., Harvey, D.J., Grimes, J.M., Jones, E.Y., Stuart, D.I.

(2009) J Virol 83: 8259

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Mammarenavirus machupoense
Macromolecule	GLYCOPROTEIN 1 (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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2WO1 \| pdb_00002wo1	Download File View File

Crystal Structure of the EphA4 Ligand Binding Domain

Bowden, T.A., Aricescu, A.R., Nettleship, J.E., Siebold, C., Rahman-Huq, N., Owens, R.J., Stuart, D.I., Jones, E.Y.

(2009) Structure 17: 1386

Released	2009-10-27
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Homo sapiens
Macromolecule	EPHRIN TYPE-A RECEPTOR (protein)
Unique Ligands	POL

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2WO2 \| pdb_00002wo2	Download File View File

Crystal Structure of the EphA4-ephrinB2 complex

Bowden, T.A., Aricescu, A.R., Nettleship, J.E., Siebold, C., Rahman-Huq, N., Owens, R.J., Stuart, D.I., Jones, E.Y.

(2009) Structure 17: 1386

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Homo sapiens
Macromolecule	EPHRIN TYPE-A RECEPTOR (protein) EPHRIN-B2 (protein)
Unique Ligands	NAG

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2WO3 \| pdb_00002wo3	Download File View File

Crystal Structure of the EphA4-ephrinA2 complex

Bowden, T.A., Aricescu, A.R., Nettleship, J.E., Siebold, C., Rahman-Huq, N., Owens, R.J., Stuart, D.I., Jones, E.Y.

(2009) Structure 17: 1386

Released	2009-10-27
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Homo sapiens
Macromolecule	EPHRIN TYPE-A RECEPTOR (protein) EPHRIN-A2 (protein)
Unique branched monosaccharides	NAG

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2X9M \| pdb_00002x9m	Download File View File

Hendra virus attachment glycoprotein

Bowden, T.A., Crispin, M., Harvey, D., Jones, E.Y., Stuart, D.I.

(2010) J Virol 84: 6208

Released	2010-04-21
Method	X-RAY DIFFRACTION 2.9 Å
Organisms	Henipavirus hendraense
Macromolecule	GLYCOPROTEIN G (protein)
Unique Ligands	NAG

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4ACP \| pdb_00004acp	Download File View File

Deactivation of human IgG1 Fc by endoglycosidase treatment

Raman, K., Bowden, T.A., Krishna, B.A., Dwek, R.A., Crispin, M., Scanlan, C.N.

(2012) J Mol Biology 420: 1

Released	2012-04-25
Method	X-RAY DIFFRACTION 2.49 Å
Organisms	Homo sapiens
Macromolecule	IG GAMMA-1 CHAIN C REGION (protein)
Unique Ligands	NAG

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4B7I \| pdb_00004b7i	Download File View File

Crystal Structure of Human IgG Fc Bearing Hybrid-type Glycans

Bowden, T.A., Baruah, K., Coles, C.H., Harvey, D.J., Song, B.D., Stuart, D.I., Aricescu, A.R., Scanlan, C.N., Jones, E.Y., Crispin, M.

(2012) J Am Chem Soc 134: 17554

Released	2012-10-17
Method	X-RAY DIFFRACTION 2.36 Å
Organisms	Homo sapiens
Macromolecule	IG GAMMA-1 CHAIN C REGION (protein)
Unique Ligands	CL
Unique branched monosaccharides	BMA, FUC, MAN, NAG

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4BM7 \| pdb_00004bm7	Download File View File

Crystal Structure of IgG Fc F241A mutant with native glycosylation

Yu, X., Baruah, K., Harvey, D.J., Vasiljevic, S., Alonzi, D.S., Song, B., Higgins, M.K., Bowden, T.A., Crispin, M., Scanlan, C.N.

(2013) J Am Chem Soc 135: 9723

Released	2013-07-03
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	IG GAMMA-1 CHAIN C REGION (protein)
Unique Ligands	CL
Unique branched monosaccharides	BMA, FUL, MAN, NAG

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4BYH \| pdb_00004byh	Download File View File

Crystal structure of sialylated IgG Fc

Crispin, M., Yu, X., Bowden, T.A.

(2013) Proc Natl Acad Sci U S A 110: E3544

Released	2013-08-21
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens
Macromolecule	IG GAMMA-1 CHAIN C REGION (protein)
Unique Ligands	CL
Unique branched monosaccharides	BMA, FUC, GAL, MAN, NAG, SIA

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4C53 \| pdb_00004c53	Download File View File

Crystal Structure of Guanarito virus GP2 in the post-fusion conformation

Parsy, M., Huiskonen, J.T., Harlos, K., Bowden, T.A.

(2013) J Virol 87: 13070

Released	2013-10-02
Method	X-RAY DIFFRACTION 4.14 Å
Organisms	Mammarenavirus guanaritoense
Macromolecule	PRE-GLYCOPROTEIN POLYPROTEIN GP COMPLEX (protein)
Unique Ligands	NAG
Unique branched monosaccharides	BMA, MAN, NAG

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4UF7 \| pdb_00004uf7	Download File View File

Ghanaian henipavirus (Gh-M74a) attachment glycoprotein in complex with human ephrinB2

Lee, B., Pernet, O., Ahmed, A.A., Zeltina, A., Beaty, S.M., Bowden, T.A.

(2015) Proc Natl Acad Sci U S A 112: E2156

Released	2015-04-01
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Ghana virus Homo sapiens
Macromolecule	EPHRIN-B2 (protein) GLYCOPROTEIN (protein)
Unique Ligands	ACT, CL, NAG, SO4

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5FT2 \| pdb_00005ft2	Download File View File

Sub-tomogram averaging of Lassa virus glycoprotein spike from virus- like particles at pH 5

Li, S., Zhaoyang, S., Pryce, R., Parsy, M.L., Fehling, S.K., Schlie, K., Siebert, C.A., Garten, W., Bowden, T.A., Strecker, T., Huiskonen, J.T.

(2016) PLoS Pathog 12: 5418

Released	2016-03-02
Method	ELECTRON MICROSCOPY 16.4 Å
Organisms	Lassa virus Josiah
Macromolecule	PRE-GLYCOPROTEIN POLYPROTEIN GP COMPLEX (protein)
Unique Ligands	NAG
Unique branched monosaccharides	NAG

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5FXU \| pdb_00005fxu	Download File View File

Crystal Structure of Puumala virus Gn glycoprotein ectodomain

Li, S., Rissanen, I., Zeltina, A., Hepojoki, J., Raghwani, J., Harlos, K., Pybus, O.G., Huiskonen, J.T., Bowden, T.A.

(2016) Cell Rep 15: 959

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.28 Å
Organisms	Orthohantavirus puumalaense
Macromolecule	ENVELOPE POLYPROTEIN (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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5FYN \| pdb_00005fyn	Download File View File

Sub-tomogram averaging of Tula virus glycoprotein spike

Li, S., Rissanen, I., Zeltina, A., Hepojoki, J., Raghwani, J., Harlos, K., Pybus, O.G., Huiskonen, J.T., Bowden, T.A.

(2016) Cell Rep 15: 959

Released	2016-06-08
Method	ELECTRON MICROSCOPY 15.6 Å
Organisms	Orthohantavirus puumalaense
Macromolecule	PUUMALA VIRUS GN GLYCOPROTEIN (protein)
Unique branched monosaccharides	BMA, MAN, NAG

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5G47 \| pdb_00005g47	Download File View File

Structure of Gc glycoprotein from severe fever with thrombocytopenia syndrome virus in the trimeric postfusion conformation

Halldorsson, S., Behrens, A.J., Harlos, K., Huiskonen, J.T., Elliott, R.M., Crispin, M., Brennan, B., Bowden, T.A.

(2016) Proc Natl Acad Sci U S A 113: 7154

Released	2016-07-06
Method	X-RAY DIFFRACTION 2.45 Å
Organisms	Severe fever with thrombocytopenia syndrome virus
Macromolecule	SFTSV GC (protein)
Unique Ligands	CL, NAG

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5JQ3 \| pdb_00005jq3	Download File View File

Crystal structure of Ebola glycoprotein

Zhao, Y., Ren, J., Stuart, D.I.

(2016) Nature 535: 168-172

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.23 Å
Organisms	Ebola virus - Mayinga, Zaire, 1976
Macromolecule	Envelope glycoprotein 1,Envelope glycoprotein 1,Envelope glycoprotein 1 (protein) Envelope glycoprotein 2 (protein)
Unique Ligands	GOL, NAG
Unique branched monosaccharides	BMA, MAN, NAG

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5JQ7 \| pdb_00005jq7	Download File View File

Crystal structure of Ebola glycoprotein in complex with toremifene

Zhao, Y., Ren, J., Stuart, D.I.

(2016) Nature 535: 168-172

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.69 Å
Organisms	Ebola virus - Mayinga, Zaire, 1976
Macromolecule	Envelope glycoprotein 1,Envelope glycoprotein 1,Envelope glycoprotein 1 (protein) Envelope glycoprotein 2 (protein)
Unique Ligands	DMS, GOL, NAG, T0R
Unique branched monosaccharides	BMA, MAN, NAG

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5JQB \| pdb_00005jqb	Download File View File

Crystal structure of Ebola glycoprotein in complex with ibuprofen

Zhao, Y., Ren, J., Stuart, D.I.

(2016) Nature 535: 168-172

Released	2016-06-29
Method	X-RAY DIFFRACTION 2.68 Å
Organisms	Ebola virus - Mayinga, Zaire, 1976
Macromolecule	Envelope glycoprotein 1,Envelope glycoprotein 1,Envelope glycoprotein 1 (protein) Envelope glycoprotein 2 (protein)
Unique Ligands	GOL, IBP, NAG
Unique branched monosaccharides	BMA, NAG

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5NOP \| pdb_00005nop	Download File View File

Structure of Mojiang virus attachment glycoprotein

Rissanen, I.R., Ahmed, A.A., Beaty, S., Azarm, K., Hong, P., Nambulli, S., Duprex, P.W., Lee, B., Bowden, T.A.

(2017) Nat Commun 8: 16060-16060

Released	2017-07-19
Method	X-RAY DIFFRACTION 1.94 Å
Organisms	Mojiang virus
Macromolecule	Attachment glycoprotein (protein)
Unique Ligands	CL

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5NUZ \| pdb_00005nuz	Download File View File

Junin virus GP1 glycoprotein in complex with an antibody Fab fragment

Zeltina, A., Krumm, S.A., Sahin, M., Struwe, W.B., Harlos, K., Nunberg, J.H., Crispin, M., Pinschewer, D.D., Doores, K.J., Bowden, T.A.

(2017) Proc Natl Acad Sci U S A 114: 7031-7036

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Mammarenavirus juninense Mus musculus
Macromolecule	Pre-glycoprotein polyprotein GP complex (protein) eOD01 heavy chain (protein) eOD01 light chain (protein)
Unique Ligands	GOL, IPA, NAG
Unique branched monosaccharides	BMA, MAN, NAG

1 to 25 of 87 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1XZ0 | pdb_00001xz0

2VSK | pdb_00002vsk

2VSM | pdb_00002vsm

2VWD | pdb_00002vwd

2WAH | pdb_00002wah

2WFO | pdb_00002wfo

2WO1 | pdb_00002wo1

2WO2 | pdb_00002wo2

2WO3 | pdb_00002wo3

2X9M | pdb_00002x9m

4ACP | pdb_00004acp

4B7I | pdb_00004b7i

4BM7 | pdb_00004bm7

4BYH | pdb_00004byh

4C53 | pdb_00004c53

4UF7 | pdb_00004uf7

5FT2 | pdb_00005ft2

5FXU | pdb_00005fxu

5FYN | pdb_00005fyn

5G47 | pdb_00005g47

5JQ3 | pdb_00005jq3

5JQ7 | pdb_00005jq7

5JQB | pdb_00005jqb

5NOP | pdb_00005nop

5NUZ | pdb_00005nuz