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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Tolbert, W.D."

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Search Summary

This query matches 20 Structures.

Refinements

Structure Determination Methodology

experimental (20)

Scientific Name of Source Organism

	Equus caballus (17)
	Saccharomyces cerevisiae S288C (2)
	Saccharomyces cerevisiae (1)

Taxonomy

Eukaryota (20)

Experimental Method

X-RAY DIFFRACTION (20)

Polymer Entity Type

Protein (20)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (14)
	2.0 - 2.5 (2)
	2.5 - 3.0 (1)

Release Date

	2000 - 2004 (2)
	2005 - 2009 (16)
	2015 - 2019 (2)

Enzyme Classification Name

	Oxidoreductases (17)
	Transferases (1)

Symmetry Type

Asymmetric (20)

SCOP Classification

	All alpha proteins (20)
	Alpha and beta proteins (a/b) (2)

AllSelected

1 to 20 of 20 Structures

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1NPF \| pdb_00001npf	Download File View File

MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH NITRIC OXIDE

Copeland, D.M., West, A.H., Richter-Addo, G.B.

(2003) Proteins 53: 182-192

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, NO, SO4

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1NPG \| pdb_00001npg	Download File View File

MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH NITROSOETHANE

Copeland, D.M., West, A.H., Richter-Addo, G.B.

(2003) Proteins 53: 182-192

Released	2003-11-11
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, NOE, SO4

Explore in 3D

2FRF \| pdb_00002frf	Download File View File

Horse Heart Myoglobin, Nitrite Adduct, Crystal Soak

Copeland, D.M., Soares, A.S., West, A.H., Richter-Addo, G.B.

(2006) J Inorg Biochem 100: 1413-1425

Released	2006-05-30
Method	X-RAY DIFFRACTION 1.2 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, NO2, SO4

Explore in 3D

2FRI \| pdb_00002fri	Download File View File

Horse Heart Myoglobin, Nitrite Adduct, Co-crystallized

Copeland, D.M., Soares, A.S., West, A.H., Richter-Addo, G.B.

(2006) J Inorg Biochem 100: 1413-1425

Released	2006-05-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, NO2, SO4

Explore in 3D

2FRJ \| pdb_00002frj	Download File View File

Nitrosyl Horse Heart Myoglobin, Nitrite/Dithionite Method

Copeland, D.M., Soares, A.S., West, A.H., Richter-Addo, G.B.

(2006) J Inorg Biochem 100: 1413-1425

Released	2006-05-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, NO, SO4

Explore in 3D

2FRK \| pdb_00002frk	Download File View File

Nitrosyl Horse Heart Myoglobin, Nitric Oxide Gas Method

Copeland, D.M., Soares, A.S., West, A.H., Richter-Addo, G.B.

(2006) J Inorg Biochem 100: 1413-1425

Released	2006-05-30
Method	X-RAY DIFFRACTION 1.3 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, NO, SO4

Explore in 3D

2NSR \| pdb_00002nsr	Download File View File

Nitromethane Modified Horse Heart Myoglobin

Copeland, D.M., West, A.H., Richter-Addo, G.B.

To be published

Released	2007-11-06
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, NSM, SO4

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2NSS \| pdb_00002nss	Download File View File

Nitrobenzene Modified Horse Heart Myoglobin

Copeland, D.M., West, A.H., Richter-Addo, G.B.

To be published

Released	2007-11-06
Method	X-RAY DIFFRACTION 2 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	HEM, NBE, SO4

Explore in 3D

2O58 \| pdb_00002o58	Download File View File

Horse heart met manganese myoglobin

Richter-Addo, G.B., Zahran, Z.N., Chooback, L., Copeland, D.M., West, A.H.

(2008) J Inorg Biochem 102: 216-233

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	MNR, SO4

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2O5B \| pdb_00002o5b	Download File View File

Manganese horse heart myoglobin, reduced

Richter-Addo, G.B., Zahran, Z.N., Chooback, L., Copeland, D.M., West, A.H.

(2008) J Inorg Biochem 102: 216-233

Released	2007-10-16
Method	X-RAY DIFFRACTION 2 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	MNH, SO4

Explore in 3D

2O5L \| pdb_00002o5l	Download File View File

Manganese horse heart myoglobin, methanol modified

Richter-Addo, G.B., Zahran, Z.N., Chooback, L., Copeland, D.M., West, A.H.

(2008) J Inorg Biochem 102: 216-233

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	MNR, MOH, SO4

Explore in 3D

2O5M \| pdb_00002o5m	Download File View File

Manganese horse heart myoglobin, azide modified

Richter-Addo, G.B., Zahran, Z.N., Chooback, L., Copeland, D.M., West, A.H.

(2008) J Inorg Biochem 102: 216-233

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	AZI, MNR, SO4

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2O5O \| pdb_00002o5o	Download File View File

Manganese horse heart myoglobin, nitrite modified

Richter-Addo, G.B., Zahran, Z.N., Chooback, L., Copeland, D.M., West, A.H.

(2008) J Inorg Biochem 102: 216-233

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	MNR, NO2, SO4

Explore in 3D

2O5Q \| pdb_00002o5q	Download File View File

Manganese horse heart myoglobin, nitric oxide modified

Richter-Addo, G.B., Zahran, Z.N., Chooback, L., Copeland, D.M., West, A.H.

(2008) J Inorg Biochem 102: 216-233

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	MNH, NO, SO4

Explore in 3D

2O5S \| pdb_00002o5s	Download File View File

Cobalt horse heart myoglobin, nitrite modified

Richter-Addo, G.B., Zahran, Z.N., Chooback, L., Copeland, D.M., West, A.H.

(2008) J Inorg Biochem 102: 216-233

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	COH, NO2, SO4

Explore in 3D

2O5T \| pdb_00002o5t	Download File View File

Cobalt horse heart myoglobin, oxidized

Richter-Addo, G.B., Zahran, Z.N., Chooback, L., Copeland, D.M., West, A.H.

(2008) J Inorg Biochem 102: 216-233

Released	2007-10-16
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	COH, SO4

Explore in 3D

2R25 \| pdb_00002r25	Download File View File

Complex of YPD1 and SLN1-R1 with bound Mg2+ and BeF3-

Copeland, D.M., Zhao, X., Soares, A.S., West, A.H.

(2008) J Mol Biology 375: 1141-1151

Released	2008-01-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	Osmosensing histidine protein kinase SLN1 (protein) Phosphorelay intermediate protein YPD1 (protein)
Unique Ligands	BEF, MG, NA

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3BA2 \| pdb_00003ba2	Download File View File

Cyanide bound Chlorin substituted Myoglobin

Yi, J., Copeland, D.M., Richter-Addo, G.B.

To be published

Released	2008-11-11
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Equus caballus
Macromolecule	Myoglobin (protein)
Unique Ligands	CYN, HKL, SO4

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5KBX \| pdb_00005kbx	Download File View File

Co-crystal structure of the Saccharomyces cerevisiae histidine phosphotransfer signaling protein Ypd1 and the receiver domain of its downstream response regulator Ssk1

Menon, S.K., West, A.H.

To be published

Released	2017-06-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Osmolarity two-component system protein SSK1 (protein) Phosphorelay intermediate protein YPD1 (protein)
Unique Ligands	GOL, PO4

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6M7W \| pdb_00006m7w	Download File View File

Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins

Menon, S.K., Soni, K.S., West, A.H.

(2019) BMC Biochem 20: 1-1

Released	2019-02-06
Method	X-RAY DIFFRACTION 1.98 Å
Organisms	Saccharomyces cerevisiae S288C
Macromolecule	Phosphorelay intermediate protein YPD1 (protein)

1 to 20 of 20 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1NPF | pdb_00001npf

MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH NITRIC OXIDE

1NPG | pdb_00001npg

MYOGLOBIN (HORSE HEART) WILD-TYPE COMPLEXED WITH NITROSOETHANE

2FRF | pdb_00002frf

Horse Heart Myoglobin, Nitrite Adduct, Crystal Soak

2FRI | pdb_00002fri

Horse Heart Myoglobin, Nitrite Adduct, Co-crystallized

2FRJ | pdb_00002frj

Nitrosyl Horse Heart Myoglobin, Nitrite/Dithionite Method

2FRK | pdb_00002frk

Nitrosyl Horse Heart Myoglobin, Nitric Oxide Gas Method

2NSR | pdb_00002nsr

Nitromethane Modified Horse Heart Myoglobin

2NSS | pdb_00002nss

Nitrobenzene Modified Horse Heart Myoglobin

2O58 | pdb_00002o58

Horse heart met manganese myoglobin

2O5B | pdb_00002o5b

Manganese horse heart myoglobin, reduced

2O5L | pdb_00002o5l

Manganese horse heart myoglobin, methanol modified

2O5M | pdb_00002o5m

Manganese horse heart myoglobin, azide modified

2O5O | pdb_00002o5o

Manganese horse heart myoglobin, nitrite modified

2O5Q | pdb_00002o5q

Manganese horse heart myoglobin, nitric oxide modified

2O5S | pdb_00002o5s

Cobalt horse heart myoglobin, nitrite modified

2O5T | pdb_00002o5t

Cobalt horse heart myoglobin, oxidized

2R25 | pdb_00002r25

Complex of YPD1 and SLN1-R1 with bound Mg2+ and BeF3-

3BA2 | pdb_00003ba2

Cyanide bound Chlorin substituted Myoglobin

5KBX | pdb_00005kbx

Co-crystal structure of the Saccharomyces cerevisiae histidine phosphotransfer signaling protein Ypd1 and the receiver domain of its downstream response regulator Ssk1

6M7W | pdb_00006m7w

Role of the highly conserved G68 residue in the yeast phosphorelay protein Ypd1: implications for interactions between histidine phosphotransfer (HPt) and response regulator proteins

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1NPF | pdb_00001npf

1NPG | pdb_00001npg

2FRF | pdb_00002frf

2FRI | pdb_00002fri

2FRJ | pdb_00002frj

2FRK | pdb_00002frk

2NSR | pdb_00002nsr

2NSS | pdb_00002nss

2O58 | pdb_00002o58

2O5B | pdb_00002o5b

2O5L | pdb_00002o5l

2O5M | pdb_00002o5m

2O5O | pdb_00002o5o

2O5Q | pdb_00002o5q

2O5S | pdb_00002o5s

2O5T | pdb_00002o5t

2R25 | pdb_00002r25

3BA2 | pdb_00003ba2

5KBX | pdb_00005kbx

6M7W | pdb_00006m7w