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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wade, H."

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Search Summary

This query matches 21 Structures.

Refinements

Structure Determination Methodology

experimental (21)

Scientific Name of Source Organism

	Bacillus subtilis (6)
	Staphylococcus aureus subsp. aureus N315 (5)
	Chlorobaculum tepidum TLS (1)
	Escherichia coli K-12 (1)

Taxonomy

Bacteria (13)

Experimental Method

	X-RAY DIFFRACTION (19)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (21)
	DNA (6)

Refinement Resolution (Å)

	1.5 - 2.0 (4)
	2.0 - 2.5 (6)
	2.5 - 3.0 (5)
	3.0 - 3.5 (4)

Release Date

	2000 - 2004 (7)
	2005 - 2009 (1)
	2010 - 2014 (7)
	2015 - 2019 (6)

Enzyme Classification Name

Ligases (1)

Symmetry Type

	Cyclic (14)
	Asymmetric (8)

SCOP Classification

	Designed proteins (7)
	All alpha proteins (1)
	All beta proteins (1)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 21 of 21 Structures

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1JM0 \| pdb_00001jm0	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL

Di Costanzo, L., Geremia, S.

(2001) J Am Chem Soc 123: 12749-12757

Released	2002-01-16
Method	X-RAY DIFFRACTION 1.7 Å
Macromolecule	PROTEIN (FOUR-HELIX BUNDLE MODEL) (protein)
Unique Ligands	DMS, MN

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1JMB \| pdb_00001jmb	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL

Di Costanzo, L., Geremia, S.

(2001) J Am Chem Soc 123: 12749-12757

Released	2002-01-16
Method	X-RAY DIFFRACTION 2.2 Å
Macromolecule	PROTEIN (FOUR-HELIX BUNDLE MODEL) (protein)
Unique Ligands	DMS, MN

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1LT1 \| pdb_00001lt1	Download File View File

SLIDING HELIX INDUCED CHANGE OF COORDINATION GEOMETRY IN A MODEL DI-MN(II) PROTEIN

Di Costanzo, L., Geremia, S.

(2003) Angew Chem Int Ed Engl 42: 417-420

Released	2003-05-20
Method	X-RAY DIFFRACTION 1.91 Å
Macromolecule	L13G-DF1 (protein)
Unique Ligands	MN

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1NVO \| pdb_00001nvo	Download File View File

Solution structure of a four-helix bundle model, apo-DF1

Maglio, O., Nastri, F., Pavone, V., Lombardi, A., DeGrado, W.F.

(2003) Proc Natl Acad Sci U S A 100: 3772-3777

Released	2003-03-25
Method	SOLUTION NMR
Macromolecule	Homodimeric Alpha2 Four-Helix Bundle (protein)

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1OVR \| pdb_00001ovr	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Mn(II)-DF1-L13

Di Costanzo, L., Geremia, S.

(2005) J Am Chem Soc 127: 17266-17276

Released	2004-05-18
Method	X-RAY DIFFRACTION 2.99 Å
Macromolecule	four-helix bundle model di-Mn(II)-DF1-L13 (protein)
Unique Ligands	MN

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1OVU \| pdb_00001ovu	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form I)

Di Costanzo, L., Geremia, S.

(2005) J Am Chem Soc 127: 17266-17276

Released	2004-04-06
Method	X-RAY DIFFRACTION 3.1 Å
Macromolecule	four-helix bundle model di-Co(II)-DF1-L13A (form I) (protein)
Unique Ligands	CO

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1OVV \| pdb_00001ovv	Download File View File

CRYSTAL STRUCTURE OF FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II)

Di Costanzo, L., Geremia, S.

(2005) J Am Chem Soc 127: 17266-17276

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.9 Å
Macromolecule	FOUR-HELIX BUNDLE MODEL di-Co(II)-DF1-L13A (form II) (protein)
Unique Ligands	CO

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2KIK \| pdb_00002kik	Download File View File

An artificial di-iron oxo-protein with phenol oxidase activity

Maglio, O., Lombardi, A.

To be published

Released	2009-11-10
Method	SOLUTION NMR
Macromolecule	Artificial diiron protein (protein)
Unique Ligands	ZN

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3Q1M \| pdb_00003q1m	Download File View File

Crystal Structure of BmrR Dimer bound to DNA and the ligand 4-amino-quinaldine

Bachas, S., Eginton, C., Gunio, G., Wade, H.

(2011) Proc Natl Acad Sci U S A 108: 11046-11051

Released	2011-06-15
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Bacillus subtilis
Macromolecule	Multidrug-efflux transporter 1 regulator (protein) 23 bp promoter DNA (nucleic acid)
Unique Ligands	M4A

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3Q2Y \| pdb_00003q2y	Download File View File

Crystal Structure of BmrR bound to ethidium

Bachas, S., Eginton, C., Gunio, G., Wade, H.

(2011) Proc Natl Acad Sci U S A 108: 11046-11051

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.95 Å
Organisms	Bacillus subtilis
Macromolecule	Multidrug-efflux transporter 1 regulator (protein) 23 bp promoter (nucleic acid)
Unique Ligands	ET, GOL

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3Q3D \| pdb_00003q3d	Download File View File

Crystal structure of BmrR bound to puromycin

Bachas, S., Eginton, C., Gunio, G., Wade, H.

(2011) Proc Natl Acad Sci U S A 108: 11046-11051

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.79 Å
Organisms	Bacillus subtilis
Macromolecule	Multidrug-efflux transporter 1 regulator (protein) BmrR promoter DNA (nucleic acid)
Unique Ligands	PUY

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3Q5P \| pdb_00003q5p	Download File View File

Crystal structure of BmrR bound to Tetracycline

Bachas, S., Eginton, C., Gunio, G., Wade, H.

(2011) Proc Natl Acad Sci U S A 108: 11046-11051

Released	2011-06-15
Method	X-RAY DIFFRACTION 2.942 Å
Organisms	Bacillus subtilis
Macromolecule	Multidrug-efflux transporter 1 regulator (protein) 23 bp BmrR promoter DNA (nucleic acid)
Unique Ligands	GOL, TAC

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3Q5R \| pdb_00003q5r	Download File View File

Crystal structure of BmrR bound to Kanamycin

Bachas, S., Eginton, C., Gunio, G., Wade, H.

(2011) Proc Natl Acad Sci U S A 108: 11046-11051

Released	2011-07-20
Method	X-RAY DIFFRACTION 3.05 Å
Organisms	Bacillus subtilis
Macromolecule	Multidrug-efflux transporter 1 regulator (protein) 23 bp promoter DNA (nucleic acid)
Unique Ligands	KAN

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3Q5S \| pdb_00003q5s	Download File View File

Crystal structure of BmrR bound to Acetylcholine

Bachas, S., Eginton, C., Gunio, G., Wade, H.

(2011) Proc Natl Acad Sci U S A 108: 11046-11051

Released	2011-06-15
Method	X-RAY DIFFRACTION 3.1 Å
Organisms	Bacillus subtilis
Macromolecule	Multidrug-efflux transporter 1 regulator (protein) 23 bp promoter DNA (nucleic acid)
Unique Ligands	ACH, GOL

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4WF2 \| pdb_00004wf2	Download File View File

Structure of E. coli BirA G142A bound to biotinol-5'-AMP

Eginton, C., Beckett, D., Wade, H.

(2015) J Mol Biology 427: 1695-1704

Released	2014-10-22
Method	X-RAY DIFFRACTION 2.31 Å
Organisms	Escherichia coli K-12
Macromolecule	Bifunctional ligase/repressor BirA (protein)
Unique Ligands	BTX

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5KAT \| pdb_00005kat	Download File View File

The structure of SAV2435 bound to TETRAPHENYLPHOSPHONIUM

Moreno, A., Wade, H.

(2016) Biochemistry 55: 4850-4863

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.101 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	SA2223 protein (protein)
Unique Ligands	GOL, P4P

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5KAU \| pdb_00005kau	Download File View File

The structure of SAV2435 bound to RHODAMINE 6G

Moreno, A., Wade, H.

(2016) Biochemistry 55: 4850-4863

Released	2016-08-24
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	SA2223 protein (protein)
Unique Ligands	GOL, RHQ

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5KAV \| pdb_00005kav	Download File View File

The structure of SAV2435

Moreno, A., Wade, H.

(2016) Biochemistry 55: 4850-4863

Released	2016-08-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	SA2223 protein (protein)
Unique Ligands	GOL

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5KAW \| pdb_00005kaw	Download File View File

The structure of SAV2435 bound to TETRAPHENYLPHOSPHONIUM and RHODAMINE 6G

Moreno, A., Wade, H.

(2016) Biochemistry 55: 4850-4863

Released	2016-08-24
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	SA2223 protein (protein)
Unique Ligands	GOL, P4P, RHQ

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5KAX \| pdb_00005kax	Download File View File

The structure of CTR107 protein bound to RHODAMINE 6G

Moreno, A., Wade, H.

(2016) Biochemistry 55: 4850-4863

Released	2016-08-24
Method	X-RAY DIFFRACTION 2 Å
Organisms	Chlorobaculum tepidum TLS
Macromolecule	CTR107 protein (protein)
Unique Ligands	GOL, RHQ

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5KCB \| pdb_00005kcb	Download File View File

The structure of SAV2435 bound to ethidium bromide

Moreno, A., Wade, H.

(2016) Biochemistry 55: 4850-4863

Released	2016-08-24
Method	X-RAY DIFFRACTION 2.101 Å
Organisms	Staphylococcus aureus subsp. aureus N315
Macromolecule	SA2223 protein (protein)
Unique Ligands	ET, SO4

1 to 21 of 21 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1JM0 | pdb_00001jm0

1JMB | pdb_00001jmb

1LT1 | pdb_00001lt1

1NVO | pdb_00001nvo

1OVR | pdb_00001ovr

1OVU | pdb_00001ovu

1OVV | pdb_00001ovv

2KIK | pdb_00002kik

3Q1M | pdb_00003q1m

3Q2Y | pdb_00003q2y

3Q3D | pdb_00003q3d

3Q5P | pdb_00003q5p

3Q5R | pdb_00003q5r

3Q5S | pdb_00003q5s

4WF2 | pdb_00004wf2

5KAT | pdb_00005kat

5KAU | pdb_00005kau

5KAV | pdb_00005kav

5KAW | pdb_00005kaw

5KAX | pdb_00005kax

5KCB | pdb_00005kcb