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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Citation Author = "Wijtmans, M."

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Search Summary

This query matches 10 Structures.

Refinements

Structure Determination Methodology

experimental (10)

Scientific Name of Source Organism

	Trypanosoma brucei (6)
	Homo sapiens (3)
	Mus musculus (1)

Taxonomy

Eukaryota (10)

Experimental Method

X-RAY DIFFRACTION (10)

Polymer Entity Type

Protein (10)

Refinement Resolution (Å)

	1.5 - 2.0 (3)
	2.0 - 2.5 (7)

Release Date

	2010 - 2014 (1)
	2015 - 2019 (9)

Enzyme Classification Name

	Hydrolases (9)
	Transferases (1)

Symmetry Type

Asymmetric (10)

SCOP Classification

	All alpha proteins (9)
	Alpha and beta proteins (a+b) (1)

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1 to 10 of 10 Structures

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Explore in 3D

2XYU \| pdb_00002xyu	Download File View File

Crystal structure of EphA4 kinase domain in complex with VUF 12058

Farenc, C.J.A., Celie, P.H.N., vanLinden, O.P.J., Siegal, G.

(2012) Eur J Med Chem 47: 493

Released	2011-11-30
Method	X-RAY DIFFRACTION 2.117 Å
Organisms	Mus musculus
Macromolecule	EPHRIN TYPE-A RECEPTOR 4, (protein)
Unique Ligands	GOL, Q9G

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5G2B \| pdb_00005g2b	Download File View File

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-008

Singh, A.K., Anthonyrajah, E.S., Brown, D.G.

(2018) J Med Chem 61: 3870-3888

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Trypanosoma brucei
Macromolecule	CLASS 1 PHOSPHODIESTERASE PDEB1 (protein)
Unique Ligands	FMT, GAI, GOL, LQY, MG, ZN

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5G57 \| pdb_00005g57	Download File View File

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-001

Singh, A.K., Brown, D.G.

(2018) J Med Chem 61: 3870-3888

Released	2017-11-29
Method	X-RAY DIFFRACTION 1.73 Å
Organisms	Trypanosoma brucei
Macromolecule	PHOSPHODIESTERASE B1 (protein)
Unique Ligands	6M5, FMT, GAI, GOL, MG, PEG, ZN

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5G5V \| pdb_00005g5v	Download File View File

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-038

Singh, A.K., Brown, D.G.

(2018) J Med Chem 61: 3870-3888

Released	2018-03-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Trypanosoma brucei
Macromolecule	PHOSPHODIESTERASE B1 (protein)
Unique Ligands	8Z4, EDO, FMT, GAI, MG, ZN

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5L8C \| pdb_00005l8c	Download File View File

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-039

Singh, A.K., Anthonyrajah, E.S., Brown, D.G.

(2018) J Med Chem 61: 3870-3888

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Trypanosoma brucei
Macromolecule	Phosphodiesterase (protein)
Unique Ligands	908, FMT, GAI, GOL, MG, PEG, ZN

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5L8Y \| pdb_00005l8y	Download File View File

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-937

Singh, A.K., Anthonyrajah, E.S., Brown, D.G.

(2018) J Med Chem 61: 3870-3888

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.14 Å
Organisms	Trypanosoma brucei
Macromolecule	Phosphodiesterase (protein)
Unique Ligands	CVA, FMT, GAI, GOL, MG, ZN

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5L9H \| pdb_00005l9h	Download File View File

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-340

Singh, A.K., Brown, D.G.

(2018) J Med Chem 61: 3870-3888

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Trypanosoma brucei
Macromolecule	Phosphodiesterase (protein)
Unique Ligands	CVL, FMT, GOL, MG, ZN

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5LAQ \| pdb_00005laq	Download File View File

Crystal structure of human phosphodiesterase 4B catalytic domain with inhibitor NPD-001

Singh, A.K., Brown, D.G.

(2018) J Med Chem 61: 3870-3888

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4B,cAMP-specific 3',5'-cyclic phosphodiesterase 4B (protein)
Unique Ligands	6M5, ACT, MG, ZN

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5LBO \| pdb_00005lbo	Download File View File

Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-001

Singh, A.K., Brown, D.G.

(2018) J Med Chem 61: 3870-3888

Released	2018-03-14
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	6M5, DTT, EDO, EPE, MG, PEG, ZN

Explore in 3D

6FTW \| pdb_00006ftw	Download File View File

Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-048

Singh, A.K., Brown, D.G.

(2019) Bioorg Med Chem 27: 3998-4012

Released	2019-03-20
Method	X-RAY DIFFRACTION 2.16 Å
Organisms	Homo sapiens
Macromolecule	cAMP-specific 3',5'-cyclic phosphodiesterase 4D (protein)
Unique Ligands	E6Z, EDO, EPE, MG, ZN

1 to 10 of 10 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

2XYU | pdb_00002xyu

Crystal structure of EphA4 kinase domain in complex with VUF 12058

5G2B | pdb_00005g2b

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-008

5G57 | pdb_00005g57

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-001

5G5V | pdb_00005g5v

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-038

5L8C | pdb_00005l8c

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-039

5L8Y | pdb_00005l8y

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-937

5L9H | pdb_00005l9h

Crystal structure of T. brucei PDE-B1 catalytic domain with inhibitor NPD-340

5LAQ | pdb_00005laq

Crystal structure of human phosphodiesterase 4B catalytic domain with inhibitor NPD-001

5LBO | pdb_00005lbo

Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-001

6FTW | pdb_00006ftw

Crystal structure of human phosphodiesterase 4D2 catalytic domain with inhibitor NPD-048

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

2XYU | pdb_00002xyu

5G2B | pdb_00005g2b

5G57 | pdb_00005g57

5G5V | pdb_00005g5v

5L8C | pdb_00005l8c

5L8Y | pdb_00005l8y

5L9H | pdb_00005l9h

5LAQ | pdb_00005laq

5LBO | pdb_00005lbo

6FTW | pdb_00006ftw