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237,317
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

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QUERY: BIRD Name HAS EXACT PHRASE "=4beta-beta-xylobiose"

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Search Summary

This query matches 64 Structures.

Refinements

Structure Determination Methodology

experimental (64)

Scientific Name of Source Organism

	Geobacillus stearothermophilus (7)
	Streptomyces olivaceoviridis (7)
	Aspergillus fumigatus Z5 (5)
	uncultured bacterium (3)
	Acetivibrio thermocellus ATCC 27405 (2)
	Bacillus pumilus (2)
	Cerrena unicolor (2)
	Drosophila melanogaster (2)
	Paenibacillus barcinonensis (2)
	Streptomyces sp. (2)

More...

Taxonomy

	Bacteria (46)
	Eukaryota (17)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (64)

Polymer Entity Type

Protein (64)

Refinement Resolution (Å)

	1.0 - 1.5 (12)
	1.5 - 2.0 (34)
	2.0 - 2.5 (13)
	2.5 - 3.0 (5)

Release Date

	1990 - 1994 (1)
	2000 - 2004 (12)
	2005 - 2009 (5)
	2010 - 2014 (17)
	2015 - 2019 (17)
	2020 - 2024 (12)

Enzyme Classification Name

	Hydrolases (52)
	Transferases (2)
	Oxidoreductases (2)

Symmetry Type

	Asymmetric (51)
	Cyclic (14)
	Dihedral (1)

SCOP Classification

	Alpha and beta proteins (a/b) (27)
	All beta proteins (18)
	Artifacts (4)
	Alpha and beta proteins (a+b) (2)
	All alpha proteins (2)

AllSelected

1 to 25 of 64 Structures

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1BCX \| pdb_00001bcx	Download File View File

MUTATIONAL AND CRYSTALLOGRAPHIC ANALYSES OF THE ACTIVE SITE RESIDUES OF THE BACILLUS CIRCULANS XYLANASE

Campbell, R.L., Wakarchuk, W.W.

(1994) Protein Sci 3: 467-475

Released	1994-10-15
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Niallia circulans
Macromolecule	XYLANASE (protein)
Unique Ligands	SO4
Unique branched monosaccharides	XYP

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1GOQ \| pdb_00001goq	Download File View File

Thermostable xylanase I from Thermoascus aurantiacus - Room temperature xylobiose complex

Lo Leggio, L., Larsen, S.

(2001) FEBS Lett 509: 303

Released	2001-12-07
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermoascus aurantiacus
Macromolecule	ENDO-1,4-BETA-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1GQJ \| pdb_00001gqj	Download File View File

Structure of Pseudomonas cellulosa alpha-D-glucuronidase complexed with xylobiose

Nurizzo, D., Nagy, T., Gilbert, H.J., Davies, G.J.

(2002) Structure 10: 547

Released	2002-09-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Cellvibrio japonicus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	CO, EDO
Unique branched monosaccharides	XYP

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1ISW \| pdb_00001isw	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylobiose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1ISX \| pdb_00001isx	Download File View File

Crystal structure of xylanase from Streptomyces olivaceoviridis E-86 complexed with xylotriose

Fujimoto, Z., Kuno, A., Kaneko, S., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2002) J Mol Biology 316: 65-78

Released	2002-02-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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1L8N \| pdb_00001l8n	Download File View File

The 1.5A crystal structure of alpha-D-glucuronidase from Bacillus stearothermophilus T-1, complexed with 4-O-methyl-glucuronic acid and xylotriose

Golan, G., Shallom, D., Teplitsky, A., Zaide, G., Shulami, S., Baasov, T., Stojanoff, V., Thompson, A., Shoham, Y., Shoham, G.

(2004) J Biological Chem 279: 3014-3024

Released	2003-03-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	ALPHA-D-GLUCURONIDASE (protein)
Unique Ligands	GCW, GOL
Unique branched monosaccharides	XYP

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1R87 \| pdb_00001r87	Download File View File

Crystal structure of the extracellular xylanase from Geobacillus stearothermophilus T-6 (XT6, monoclinic form): The complex of the WT enzyme with xylopentaose at 1.67A resolution

Bar, M., Golan, G., Zolotnitsky, G., Shoham, Y., Shoham, G.

(2004) Proc Natl Acad Sci U S A 101: 11275-11280

Released	2004-07-20
Method	X-RAY DIFFRACTION 1.67 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, SO4, ZN
Unique branched monosaccharides	XYP

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1UY2 \| pdb_00001uy2	Download File View File

Binding sub-site dissection of a family 6 carbohydrate-binding module by X-ray crystallography and isothermal titration calorimetry

Van Bueren, A.L., Boraston, A.B.

(2004) J Mol Biology 340: 869

Released	2004-06-18
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Thermoclostridium stercorarium
Macromolecule	ENDO-1,4-BETA-XYLANASE A (protein)
Unique Ligands	CA, GOL, NA
Unique branched monosaccharides	XYP

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1V6U \| pdb_00001v6u	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 2(2)-alpha-L-arabinofuranosyl-xylobiose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	endo-1,4-beta-D-xylanase (protein)
Unique Ligands	XYP, XYS
Unique branched monosaccharides	AHR, XYP

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1V6V \| pdb_00001v6v	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(2)-alpha-L-arabinofuranosyl-xylotriose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	AHR, XYP

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1V6W \| pdb_00001v6w	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 2(2)-4-O-methyl-alpha-D-glucuronosyl-xylobiose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	GCV, XYP

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1V6X \| pdb_00001v6x	Download File View File

Crystal Structure Of Xylanase From Streptomyces Olivaceoviridis E-86 Complexed With 3(3)-4-O-methyl-alpha-D-glucuronosyl-xylotriose

Fujimoto, Z., Kaneko, S., Kuno, A., Kobayashi, H., Kusakabe, I., Mizuno, H.

(2004) J Biological Chem 279: 9606-9614

Released	2004-04-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Streptomyces olivaceoviridis
Macromolecule	ENDO-1,4-BETA-D-XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	GCV, XYP

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1W9T \| pdb_00001w9t	Download File View File

Structure of a beta-1,3-glucan binding CBM6 from Bacillus halodurans in complex with xylobiose

Boraston, A.B., van Bueren, A.L.

(2005) J Biological Chem 280: 530

Released	2004-11-03
Method	X-RAY DIFFRACTION 1.62 Å
Organisms	Halalkalibacterium halodurans
Macromolecule	BH0236 PROTEIN (protein)
Unique Ligands	NA, XYP, XYS
Unique branched monosaccharides	XYP

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1WU6 \| pdb_00001wu6	Download File View File

Crystal structure of reducing-end-xylose releasing exo-oligoxylanase E70A mutant complexed with xylobiose

Fushinobu, S., Hidaka, M., Honda, Y., Wakagi, T., Shoun, H., Kitaoka, M.

(2005) J Biological Chem 280: 17180-17186

Released	2005-02-22
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	xylanase Y (protein)
Unique Ligands	GOL, NI
Unique branched monosaccharides	XYP

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2B46 \| pdb_00002b46	Download File View File

Crystal structure of an engineered uninhibited Bacillus subtilis xylanase in substrate bound state

Sansen, S., Dewilde, M., De Ranter, C.J., Sorensen, J.F., Sibbesen, O., Gebruers, K., Brijs, K., Courtin, C.M., Delcour, J.A., Rabijns, A.

To be published

Released	2006-09-19
Method	X-RAY DIFFRACTION 2.215 Å
Organisms	Bacillus subtilis
Macromolecule	Endo-1,4-beta-xylanase A (protein)
Unique branched monosaccharides	XYP

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2NQY \| pdb_00002nqy	Download File View File

Crystal structure of alkaline thermophlic xylanase from Bacillus sp. (NCL 86-6-10) with complex xylotriose: Xylotriose cleaved to xylobiose and xylose

Satyanarayana, L., Gaikwad, S.M., Balakrishnan, H., Suresh, C.G.

To be published

Released	2007-11-06
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Bacillus sp. (in: firmicutes)
Macromolecule	FAMILY 11 XYLANASE (protein)
Unique Ligands	XYP
Unique branched monosaccharides	XYP

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2QZ2 \| pdb_00002qz2	Download File View File

Crystal structure of a glycoside hydrolase family 11 xylanase from Aspergillus niger in complex with xylopentaose

Vandermarliere, E., Rombouts, S., Strelkov, S.V., Delcour, J.A., Courtin, C.M., Rabijns, A.

(2008) Biochem J 410: 71-79

Released	2007-12-25
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Aspergillus niger
Macromolecule	Endo-1,4-beta-xylanase I (protein)
Unique Ligands	NA
Unique branched monosaccharides	XYP

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2VGD \| pdb_00002vgd	Download File View File

Crystal structure of environmental isolated GH11 in complex with xylobiose and feruloyl-arabino-xylotriose

Vardakou, M., Dumon, C., Flint, J.E., Murray, J.W., Christakopoulos, P., Weiner, D.P., Juge, N., Lewis, R.J., Gilbert, H.J.

(2008) J Mol Biology 375: 1293

Released	2007-12-25
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Escherichia coli
Macromolecule	ENXYN11A (protein)
Unique Ligands	FX3, GOL, NA
Unique branched monosaccharides	XYP

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3MMD \| pdb_00003mmd	Download File View File

Crystal structure of the W241A mutant of xylanase from Geobacillus stearothermophilus T-6 (XT6) complexed with hydrolyzed xylopentaose

Solomon, V., Zolotnitsky, G., Feinberg, H., Tabachnikov, O., Shoham, Y., Shoham, G.

To be published

Released	2011-04-27
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	CL, NA, ZN
Unique branched monosaccharides	XYP

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3MSD \| pdb_00003msd	Download File View File

Enzyme-Substrate interactions of IXT6, the intracellular xylanase of G. stearothermophilus.

Solomon, V., Zolotnitsky, G., Alhadeff, R., Shoham, Y., Shoham, G.

To be published

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.58 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Intra-cellular xylanase ixt6 (protein)
Unique Ligands	ACT, GOL, NA
Unique branched monosaccharides	XYP

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3MSG \| pdb_00003msg	Download File View File

Enzyme-Substrate interactions of IXT6, the intracellular xylanase of G. stearothermophilus.

Solomon, V., Zolotnitsky, G., Alhadeff, R., Shoham, Y., Shoham, G.

To be published

Released	2011-05-11
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Intra-cellular xylanase ixt6 (protein)
Unique Ligands	ACT, GOL, NA, XYP
Unique branched monosaccharides	XYP

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3MUA \| pdb_00003mua	Download File View File

Enzyme-Substrate interactions of IXT6, the intracellular xylanase of G. stearothermophilus.

Solomon, V., Zolotnitsky, G., Alhadeff, R., Shoham, Y., Shoham, G.

To be published

Released	2011-06-01
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Xylanase (protein)
Unique Ligands	ACT, GOL, NA, XYP
Unique branched monosaccharides	XYP

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3MUI \| pdb_00003mui	Download File View File

Enzyme-Substrate interactions of IXT6, the intracellular xylanase of G. stearothermophilus.

Solomon, V., Zolotnitsky, G., Alhadeff, R., Shoham, Y., Shoham, G.

To be published

Released	2011-06-01
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Geobacillus stearothermophilus
Macromolecule	Xylanase (protein)
Unique Ligands	GOL, NA
Unique branched monosaccharides	XYP

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3NJ3 \| pdb_00003nj3	Download File View File

Crystal structure of xylanase 10B from Thermotoga petrophila RKU-1 in complex with xylobiose

Santos, C.R., Meza, A.N., Trindade, D.M., Ruller, R., Squina, F.M., Prade, R.A., Murakami, M.T.

(2010) Biochem Biophys Res Commun 403: 214-219

Released	2011-05-04
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Thermotoga petrophila RKU-1
Macromolecule	Endo-1,4-beta-xylanase (protein)
Unique Ligands	ACT, SO4
Unique branched monosaccharides	XYP

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3VSU \| pdb_00003vsu	Download File View File

The complex structure of XylC with xylobiose

Huang, C.H., Sun, Y., Ko, T.P., Ma, Y., Chen, C.C., Zheng, Y., Chan, H.C., Pang, X., Wiegel, J., Shao, W., Guo, R.T.

(2012) Biochem J 448: 401-407

Released	2013-02-27
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Thermoanaerobacterium saccharolyticum JW/SL-YS485
Macromolecule	Xylosidase (protein)
Unique branched monosaccharides	XYP

1 to 25 of 64 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1BCX | pdb_00001bcx

1GOQ | pdb_00001goq

1GQJ | pdb_00001gqj

1ISW | pdb_00001isw

1ISX | pdb_00001isx

1L8N | pdb_00001l8n

1R87 | pdb_00001r87

1UY2 | pdb_00001uy2

1V6U | pdb_00001v6u

1V6V | pdb_00001v6v

1V6W | pdb_00001v6w

1V6X | pdb_00001v6x

1W9T | pdb_00001w9t

1WU6 | pdb_00001wu6

2B46 | pdb_00002b46

2NQY | pdb_00002nqy

2QZ2 | pdb_00002qz2

2VGD | pdb_00002vgd

3MMD | pdb_00003mmd

3MSD | pdb_00003msd

3MSG | pdb_00003msg

3MUA | pdb_00003mua

3MUI | pdb_00003mui

3NJ3 | pdb_00003nj3

3VSU | pdb_00003vsu