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235,183 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: BIRD Name HAS EXACT PHRASE "=LEUPEPTIN"

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Search Summary

This query matches 17 Structures.

Refinements

Structure Determination Methodology

experimental (17)

Scientific Name of Source Organism

	Streptomyces roseus (14)
	Homo sapiens (8)
	Bos taurus (3)
	Severe acute respiratory syndrome coronavirus 2 (2)
	synthetic construct (2)
	Carica papaya (1)
	Hordeum vulgare (1)
	Plasmodium falciparum (1)
	Rattus norvegicus (1)

Taxonomy

	Eukaryota (15)
	Bacteria (14)
	Riboviria (2)
	other sequences (2)

Experimental Method

X-RAY DIFFRACTION (17)

Polymer Entity Type

Protein (17)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (8)
	2.5 - 3.0 (2)
	3.0 - 3.5 (1)

Release Date

	1990 - 1994 (1)
	1995 - 1999 (2)
	2000 - 2004 (1)
	2005 - 2009 (9)
	2015 - 2019 (2)
	2020 - 2024 (2)

Enzyme Classification Name

Hydrolases (17)

Symmetry Type

	Asymmetric (11)
	Cyclic (4)
	Dihedral (2)

SCOP Classification

	All beta proteins (8)
	Alpha and beta proteins (a+b) (4)

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1 to 17 of 17 Structures

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1JRS \| pdb_00001jrs	Download File View File

HEMIACETAL COMPLEX BETWEEN LEUPEPTIN AND TRYPSIN

Kurinov, I.V., Harrison, R.W.

(1996) Protein Sci 5: 752-758

Released	1996-10-14
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Bos taurus Streptomyces roseus
Macromolecule	Leupeptin (protein) TRYPSIN (protein)
Unique Ligands	CA

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1JRT \| pdb_00001jrt	Download File View File

HEMIACETAL COMPLEX BETWEEN LEUPEPTIN AND TRYPSIN

Kurinov, I.V., Harrison, R.W.

(1996) Protein Sci 5: 752-758

Released	1996-10-14
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Bos taurus
Macromolecule	LEUPEPTIN (protein) TRYPSIN (protein)
Unique Ligands	CA

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1POP \| pdb_00001pop	Download File View File

X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A PAPAIN-LEUPEPTIN COMPLEX

Schroder, E., Crawford, C.

(1993) FEBS Lett 315: 38-42

Released	1993-10-31
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Carica papaya Streptomyces roseus
Macromolecule	LEUPEPTIN (protein) PAPAIN (protein)
Unique Ligands	MOH

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1TL9 \| pdb_00001tl9	Download File View File

High resolution crystal structure of calpain I protease core in complex with leupeptin

Moldoveanu, T., Campbell, R.L., Cuerrier, D., Davies, P.L.

(2004) J Mol Biology 343: 1313-1326

Released	2004-11-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Rattus norvegicus Streptomyces roseus
Macromolecule	Calpain 1, large [catalytic] subunit (protein) leupeptin inhibitor (protein)
Unique Ligands	CA

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2AGI \| pdb_00002agi	Download File View File

The leupeptin-trypsin covalent complex at 1.14 A resolution

Radisky, E.S., Lee, J.M., Lu, C.J., Koshland Jr., D.E.

(2006) Proc Natl Acad Sci U S A 103: 6835-6840

Released	2006-05-16
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Bos taurus Streptomyces roseus
Macromolecule	beta-trypsin (protein) leupeptin (protein)
Unique Ligands	CA, SO4

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2F9N \| pdb_00002f9n	Download File View File

Crystal Structure of the Recombinant Human Alpha I Tryptase Mutant K192Q/D216G in Complex with Leupeptin

Rohr, K.B., Selwood, T., Marquardt, U., Huber, R., Schechter, N.M., Bode, W., Than, M.E.

(2005) J Mol Biology 357: 195-209

Released	2006-01-31
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Streptomyces roseus
Macromolecule	Leupeptin (protein) alpha I tryptase (protein)
Unique Ligands	BU3, NAG
Unique branched monosaccharides	FUC, NAG

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2F9P \| pdb_00002f9p	Download File View File

Crystal Structure of the Recombinant Human Alpha I Tryptase Mutant D216G in Complex with Leupeptin

Rohr, K.B., Selwood, T., Marquardt, U., Huber, R., Schechter, N.M., Bode, W., Than, M.E.

(2005) J Mol Biology 357: 195-209

Released	2006-01-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Streptomyces roseus
Macromolecule	Leupeptin (protein) Tryptase alpha-1 (protein)
Unique Ligands	BU3, NAG
Unique branched monosaccharides	FUC, NAG

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2FO5 \| pdb_00002fo5	Download File View File

Crystal structure of recombinant barley cysteine endoprotease B isoform 2 (EP-B2) in complex with leupeptin

Bethune, M.T., Strop, P., Brunger, A.T., Khosla, C.

(2006) Chem Biol 13: 637-647

Released	2006-07-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Hordeum vulgare Streptomyces roseus
Macromolecule	ACE-LEU-LEU-argininal (leupeptin) (protein) Cysteine proteinase EP-B 2 (protein)
Unique Ligands	SO4

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2NQA \| pdb_00002nqa	Download File View File

Catalytic Domain of Human Calpain 8

Davis, T.L., Paramanathan, R., Butler-Cole, C., Finerty Jr., P.J., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens Streptomyces roseus
Macromolecule	Calpain-8 (protein) Leupeptin Inhibitor (protein)
Unique Ligands	CA

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2P0R \| pdb_00002p0r	Download File View File

Structure of Human Calpain 9 in complex with Leupeptin

Davis, T.L., Paramanathan, R., Walker, J.R., Butler-Cole, C., Finerty Jr., P.J., Weigelt, J., Sundstrom, M., Arrowsmith, C.H., Edwards, A.M., Bochkarev, A., Dhe-Paganon, S., Structural Genomics Consortium (SGC)

To be published

Released	2007-03-20
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens Streptomyces roseus
Macromolecule	Calpain-9 (protein) leupeptin (protein)
Unique Ligands	CA

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2PSX \| pdb_00002psx	Download File View File

Crystal Structure of Human Kallikrein 5 in complex with Leupeptin

Debela, M., Bode, W., Goettig, P.

(2007) J Mol Biology 373: 1017-1031

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Streptomyces roseus
Macromolecule	Kallikrein-5 (protein) LEUPEPTIN (protein)
Unique branched monosaccharides	NAG

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2PSY \| pdb_00002psy	Download File View File

Crystal Structure of Human Kallikrein 5 in complex with Leupeptin and Zinc

Debela, M., Bode, W., Goettig, P.

(2007) J Mol Biology 373: 1017-1031

Released	2007-09-11
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Homo sapiens Streptomyces roseus
Macromolecule	Kallikrein-5 (protein) LEUPEPTIN (protein)
Unique Ligands	ZN
Unique branched monosaccharides	NAG

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3BPM \| pdb_00003bpm	Download File View File

Crystal Structure of Falcipain-3 with Its inhibitor, Leupeptin

kerr, I.D., Lee, J.H., Brinen, L.S.

(2009) J Med Chem 52: 852-857

Released	2008-12-30
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Plasmodium falciparum Streptomyces roseus
Macromolecule	Cysteine protease falcipain-3 (protein) Leupeptin (protein)
Unique Ligands	SO4

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5MS4 \| pdb_00005ms4	Download File View File

Kallikrein-related peptidase 8 leupeptin inhibitor complex

Debela, M., Magdolen, V., Skala, W., Bode, W., Brandstetter, H., Goettig, P.

(2018) Sci Rep 8: 10705-10705

Released	2018-01-17
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens synthetic construct
Macromolecule	Kallikrein-8 (protein) LEUPEPTIN (protein)
Unique Ligands	CA, TBU

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6BKJ \| pdb_00006bkj	Download File View File

Crystal Structure of Human Calpain-3 Protease Core in Complex with Leupeptin

Ye, Q., Campbell, R.L., Davies, P.L.

(2018) J Biological Chem 293: 4056-4070

Released	2018-02-07
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Homo sapiens Streptomyces roseus
Macromolecule	Calpain-3 (protein) Leupeptin (protein)
Unique Ligands	CA

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7MRR \| pdb_00007mrr	Download File View File

Crystal Structure of SARS-CoV-2 Main Protease (3CLpro/Mpro) in Complex with Covalent Inhibitor Leupeptin

Andi, B., Kumaran, D., Soares, A.S., Kreitler, D.F., Shi, W., Jakoncic, J., Fuchs, M.R., Keereetaweep, J., Shanklin, J., McSweeney, S.

(2022) Sci Rep 12: 12197-12197

Released	2021-05-19
Method	X-RAY DIFFRACTION 2.32 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 synthetic construct
Macromolecule	3C-like proteinase (protein) LEUPEPTIN (protein)
Unique Ligands	DMS

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7NEV \| pdb_00007nev	Download File View File

Structure of the hemiacetal complex between the SARS-CoV-2 Main Protease and Leupeptin

Guenther, S., Reinke, P.Y.A., Oberthuer, D., Yefanov, O., Gelisio, L., Ginn, H.M., Lieske, J., Domaracky, M., Brehm, W., Rahmani Mashhour, A., White, T.A., Knoska, J., Pena Esperanza, G., Koua, F., Tolstikova, A., Groessler, M., Fischer, P., Hennicke, V., Fleckenstein, H., Trost, F., Galchenkova, M., Gevorkov, Y., Li, C., Awel, S., Xavier, P.L., Ullah, N., Andaleeb, H., Falke, S., Alves Franca, B., Schwinzer, M., Brognaro, H., Werner, N., Perbandt, M., Tidow, H., Seychell, B., Beck, T., Meier, S., Zaitsev-Doyle, J.J., Rogers, C., Gieseler, H., Melo, D., Monteiro, D.C.F., Dunkel, I., Lane, T.J., Peck, A., Saouane, S., Hakanpaeae, J., Meyer, J., Noei, H., Gribbon, P., Ellinger, B., Kuzikov, M., Wolf, M., Zhang, L., Ehrt, C., Pletzer-Zelgert, J., Wollenhaupt, J., Feiler, C., Weiss, M., Schluenzen, F., Schulz, E.C., Mehrabi, P., Norton-Baker, B., Schmidt, C., Lorenzen, K., Schubert, R., Sun, X., Han, H., Chari, A., Fernandez Garcia, Y., Turk, D., Hilgenfeld, R., Rarey, M., Zaliani, A., Chapman, H.N., Pearson, A., Betzel, C., Meents, A.

(2021) Science 372: 642-646

Released	2021-03-03
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Severe acute respiratory syndrome coronavirus 2 Streptomyces roseus
Macromolecule	3C-like proteinase (protein) LEUPEPTIN (protein)
Unique Ligands	CL, DMS, IMD

1 to 17 of 17 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1JRS | pdb_00001jrs

HEMIACETAL COMPLEX BETWEEN LEUPEPTIN AND TRYPSIN

1JRT | pdb_00001jrt

HEMIACETAL COMPLEX BETWEEN LEUPEPTIN AND TRYPSIN

1POP | pdb_00001pop

X-RAY CRYSTALLOGRAPHIC STRUCTURE OF A PAPAIN-LEUPEPTIN COMPLEX

1TL9 | pdb_00001tl9

High resolution crystal structure of calpain I protease core in complex with leupeptin

2AGI | pdb_00002agi

The leupeptin-trypsin covalent complex at 1.14 A resolution

2F9N | pdb_00002f9n

Crystal Structure of the Recombinant Human Alpha I Tryptase Mutant K192Q/D216G in Complex with Leupeptin

2F9P | pdb_00002f9p

Crystal Structure of the Recombinant Human Alpha I Tryptase Mutant D216G in Complex with Leupeptin

2FO5 | pdb_00002fo5

Crystal structure of recombinant barley cysteine endoprotease B isoform 2 (EP-B2) in complex with leupeptin

2NQA | pdb_00002nqa

Catalytic Domain of Human Calpain 8

2P0R | pdb_00002p0r

Structure of Human Calpain 9 in complex with Leupeptin

2PSX | pdb_00002psx

Crystal Structure of Human Kallikrein 5 in complex with Leupeptin

2PSY | pdb_00002psy

Crystal Structure of Human Kallikrein 5 in complex with Leupeptin and Zinc

3BPM | pdb_00003bpm

Crystal Structure of Falcipain-3 with Its inhibitor, Leupeptin

5MS4 | pdb_00005ms4

Kallikrein-related peptidase 8 leupeptin inhibitor complex

6BKJ | pdb_00006bkj

Crystal Structure of Human Calpain-3 Protease Core in Complex with Leupeptin

7MRR | pdb_00007mrr

Crystal Structure of SARS-CoV-2 Main Protease (3CLpro/Mpro) in Complex with Covalent Inhibitor Leupeptin

7NEV | pdb_00007nev

Structure of the hemiacetal complex between the SARS-CoV-2 Main Protease and Leupeptin

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

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Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1JRS | pdb_00001jrs

1JRT | pdb_00001jrt

1POP | pdb_00001pop

1TL9 | pdb_00001tl9

2AGI | pdb_00002agi

2F9N | pdb_00002f9n

2F9P | pdb_00002f9p

2FO5 | pdb_00002fo5

2NQA | pdb_00002nqa

2P0R | pdb_00002p0r

2PSX | pdb_00002psx

2PSY | pdb_00002psy

3BPM | pdb_00003bpm

5MS4 | pdb_00005ms4

6BKJ | pdb_00006bkj

7MRR | pdb_00007mrr

7NEV | pdb_00007nev