RCSB PDB: Search

Warning You are using a web browser that we do not support. Our website will not work properly. Please update to a newer version or download a new web browser, such as Chrome or Firefox.

Help

Help

RCSB PDB

Deposit
- PDBx/mmCIF file
- pdb_extract
- SF-Tool
- Ligand Expo
- MAXIT
- Validation Server
- Validation API
- Information for Journals
- Validation Task Forces
- wwPDB OneDep System
- PDB-IHM
Search
Visualize
Analyze
Download
Learn
- Training Courses
- Guide to PDB Data
- Molecule of the Month
- Educational Resources
- Curricula
- Browse
- News
- SciArt Galleries
- Irving Geis
- David Goodsell
About
Careers
COVID-19

238,346
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

	Include CSM
Advanced Search \| Browse Annotations		Help

Search
Query History
Browse Annotations
MyPDB

QUERY: BIRD Name HAS EXACT PHRASE "=RITONAVIR"

MyPDB Login

Search API

Advanced Search Query Builder

Help

Full Text

Structure Attributes

Chemical Attributes

Help

NOT

Count

Add Subquery

Sequence Similarity

Sequence Motif

Structure Similarity

Structure Motif

Chemical Similarity

Return

grouped by

Include Computed Structure Models (CSM)

Count

Clear

Search Summary

This query matches 19 Structures.

Refinements

Structure Determination Methodology

experimental (19)

Scientific Name of Source Organism

	Human immunodeficiency virus 1 (9)
	Homo sapiens (5)
	Candida albicans (1)
	Candida parapsilosis (1)
	Cryphonectria parasitica (1)
	Plasmodium falciparum 3D7 (1)
	Sus scrofa (1)

Taxonomy

	Eukaryota (10)
	Riboviria (9)

Experimental Method

X-RAY DIFFRACTION (19)

Polymer Entity Type

Protein (19)

Refinement Resolution (Å)

	1.0 - 1.5 (4)
	1.5 - 2.0 (4)
	2.0 - 2.5 (8)
	2.5 - 3.0 (3)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (2)
	2005 - 2009 (2)
	2010 - 2014 (9)
	2015 - 2019 (3)
	2020 - 2024 (2)

Enzyme Classification Name

	Oxidoreductases (5)
	Hydrolases (11)

Membrane Protein Annotation

OPM (2)

Symmetry Type

	Asymmetric (8)
	Cyclic (11)
	Dihedral (2)

SCOP Classification

	All beta proteins (13)
	All alpha proteins (5)

AllSelected

1 to 19 of 19 Structures

Page 1 of 1

Sort by

Explore in 3D

1HXW \| pdb_00001hxw	Download File View File

HIV-1 PROTEASE DIMER COMPLEXED WITH A-84538

Park, C.H., Nienaber, V., Kong, X.P.

(1995) Proc Natl Acad Sci U S A 92: 2484-2488

Released	1998-02-04
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	RIT

Explore in 3D

1N49 \| pdb_00001n49	Download File View File

Viability of a Drug-Resistant HIV-1 Protease Variant: Structural Insights for Better Anti-Viral Therapy

Prabu-Jeyabalan, M., Nalivaika, E.A., King, N.M., Schiffer, C.A.

(2003) J Virol 77: 1306-1315

Released	2003-01-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	RIT

Explore in 3D

1RL8 \| pdb_00001rl8	Download File View File

Crystal structure of the complex of resistant strain of hiv-1 protease(v82a mutant) with ritonavir

Rezacova, P., Brynda, J., Sedlacek, J., Konvalinka, J., Fabry, M., Horejsi, M.

(2005) To be published

Released	2005-04-19
Method	X-RAY DIFFRACTION 2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	protease RETROPEPSIN (protein)
Unique Ligands	RIT

Explore in 3D

1SH9 \| pdb_00001sh9	Download File View File

Comparing the Accumulation of Active Site and Non-active Site Mutations in the HIV-1 Protease

Clemente, J.C., Moose, R.E., Hemrajani, R., Govindasamy, L., Reutzel, R., McKenna, R., Abanje-McKenna, M., Goodenow, M.M., Dunn, B.M.

(2004) Biochemistry 43: 12141-12151

Released	2004-10-05
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	POL polyprotein (protein)
Unique Ligands	RIT

Explore in 3D

2B60 \| pdb_00002b60	Download File View File

Structure of HIV-1 protease mutant bound to Ritonavir

Clemente, J.C., Stow, L.R., Janka, L.K., Jeung, J.A., Desai, K.A., Govindasamy, L., Agbandje-McKenna, M., McKenna, R., Goodenow, M.M., Dunn, B.M.

To be published

Released	2006-11-14
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Gag-Pol polyprotein (protein)
Unique Ligands	GOL, RIT

Explore in 3D

3NDW \| pdb_00003ndw	Download File View File

HIV-1 Protease Saquinavir:Ritonavir 1:15 complex structure

Geremia, S., Olajuyigbe, F.M., Demitri, N.

(2011) Cryst Growth Des 11: 4378-4385

Released	2011-07-20
Method	X-RAY DIFFRACTION 1.14 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	ACT, DMS, NA, RIT, SO4

Explore in 3D

3NDX \| pdb_00003ndx	Download File View File

HIV-1 Protease Saquinavir:Ritonavir 1:50 complex structure

Geremia, S., Olajuyigbe, F.M., Demitri, N.

(2011) Cryst Growth Des 11: 4378-4385

Released	2011-07-20
Method	X-RAY DIFFRACTION 1.03 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	CL, DMS, GOL, RIT, SO4

Explore in 3D

3NXU \| pdb_00003nxu	Download File View File

Crystal structure of human cytochrome P4503A4 bound to an inhibitor ritonavir

Sevrioukova, I.F., Poulos, T.L.

(2010) Proc Natl Acad Sci U S A 107: 18422-18427

Released	2010-10-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 3A4 (protein)
Unique Ligands	DMS, HEM, RIT

Explore in 3D

3PRS \| pdb_00003prs	Download File View File

Endothiapepsin in complex with ritonavir

Koester, H., Heine, A., Klebe, G.

(2012) ChemMedChem 7: 248-261

Released	2011-10-26
Method	X-RAY DIFFRACTION 1.38 Å
Organisms	Cryphonectria parasitica
Macromolecule	Endothiapepsin (protein)
Unique Ligands	1PE, DMS, GOL, PGE, RIT

Explore in 3D

3Q70 \| pdb_00003q70	Download File View File

Secreted aspartic protease in complex with ritonavir

Koester, H., Heine, A., Klebe, G.

To be published

Released	2012-01-04
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Candida albicans
Macromolecule	Candidapepsin-2 (protein)
Unique Ligands	MRD, RIT, ZN

Explore in 3D

3TNE \| pdb_00003tne	Download File View File

The crystal structure of protease Sapp1p from Candida parapsilosis in complex with the HIV protease inhibitor ritonavir

Dostal, J., Brynda, J., Hruskova-Heidingsfeldova, O., Pachl, P., Pichova, I., Rezacova, P.

(2012) J Enzyme Inhib Med Chem 27: 160-165

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Candida parapsilosis
Macromolecule	Secreted aspartic protease (protein)
Unique Ligands	RIT

Explore in 3D

4EYR \| pdb_00004eyr	Download File View File

Crystal structure of multidrug-resistant clinical isolate 769 HIV-1 protease in complex with ritonavir

Liu, Z., Yedidi, R.S., Wang, Y., Brunzelle, J.S., Kovari, I.A., Kovari, L.C.

(2013) Biochem Biophys Res Commun 431: 232-238

Released	2013-01-30
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	HIV-1 PROTEASE (protein)
Unique Ligands	RIT

Explore in 3D

4NJV \| pdb_00004njv	Download File View File

Crystal structure of multidrug-resistant clinical isolate A02 HIV-1 protease in complex with ritonavir

Yedidi, R.S., Garimella, H., Chang, S.B., Kaufman, J.D., Das, D., Wingfield, P.T., Mitsuya, H.

(2014) Antimicrob Agents Chemother 58: 3679-3688

Released	2014-04-02
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Human immunodeficiency virus 1
Macromolecule	Protease (protein)
Unique Ligands	RIT

Explore in 3D

5VC0 \| pdb_00005vc0	Download File View File

Crystal structure of human CYP3A4 bound to ritonavir

Sevrioukova, I.

(2017) Biochemistry 56: 3058-3067

Released	2017-05-31
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 3A4 (protein)
Unique Ligands	HEM, RIT

Explore in 3D

5VCE \| pdb_00005vce	Download File View File

Crystal structure of the cysteine depleted CYP3A4 bound to ritonavir

Sevrioukova, I.

(2017) Biochemistry 56: 3058-3067

Released	2017-05-31
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 3A4 (protein)
Unique Ligands	HEM, RIT

Explore in 3D

5VEU \| pdb_00005veu	Download File View File

Human Cytochrome P450 3A5 (CYP3A5)

Hsu, M.-H., Johnson, E.F.

(2018) Mol Pharmacol 93: 14-24

Released	2017-11-15
Method	X-RAY DIFFRACTION 2.91 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 3A5 (protein)
Unique Ligands	HEM, RIT

Explore in 3D

6XCY \| pdb_00006xcy	Download File View File

Porcine pepsin in complex with ritonavir

Vuksanovic, N., Silvaggi, N.R.

To be published

Released	2021-06-16
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Sus scrofa
Macromolecule	Pepsin A (protein)
Unique Ligands	RIT

Explore in 3D

7VE0 \| pdb_00007ve0	Download File View File

Crystal Structure of Ritonavir bound Plasmepsin II (PMII) from Plasmodium falciparum

Mishra, V., Rathore, I., Bhaumik, P.

(2024) Curr Res Struct Biol 7: 100128-100128

Released	2023-02-01
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Plasmodium falciparum 3D7
Macromolecule	Plasmepsin II (protein)
Unique Ligands	CPS, EDO, RIT

Explore in 3D

3TJS \| pdb_00003tjs	Download File View File

Crystal Structure of the complex between human cytochrome P450 3A4 and desthiazolylmethyloxycarbonyl ritonavir

Sevrioukova, I.F., Poulos, T.L.

(2012) Arch Biochem Biophys 520: 108-116

Released	2012-03-07
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Cytochrome P450 3A4 (protein)
Unique Ligands	D0R, HEM

1 to 19 of 19 Structures

Page 1 of 1

Sort by

About
About Us
Citing Us
Publications
Team
Careers
Usage & Privacy

Support
Contact Us
Help
Website FAQ
Glossary
Service Status

RCSB PDB is hosted by

RCSB PDB is a member of the

RCSB Partners
Nucleic Acid Knowledgebase

wwPDB Partners
RCSB PDB
PDBe
PDBj
BMRB
EMDB

RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1HXW | pdb_00001hxw

HIV-1 PROTEASE DIMER COMPLEXED WITH A-84538

1N49 | pdb_00001n49

Viability of a Drug-Resistant HIV-1 Protease Variant: Structural Insights for Better Anti-Viral Therapy

1RL8 | pdb_00001rl8

Crystal structure of the complex of resistant strain of hiv-1 protease(v82a mutant) with ritonavir

1SH9 | pdb_00001sh9

Comparing the Accumulation of Active Site and Non-active Site Mutations in the HIV-1 Protease

2B60 | pdb_00002b60

Structure of HIV-1 protease mutant bound to Ritonavir

3NDW | pdb_00003ndw

HIV-1 Protease Saquinavir:Ritonavir 1:15 complex structure

3NDX | pdb_00003ndx

HIV-1 Protease Saquinavir:Ritonavir 1:50 complex structure

3NXU | pdb_00003nxu

Crystal structure of human cytochrome P4503A4 bound to an inhibitor ritonavir

3PRS | pdb_00003prs

Endothiapepsin in complex with ritonavir

3Q70 | pdb_00003q70

Secreted aspartic protease in complex with ritonavir

3TNE | pdb_00003tne

The crystal structure of protease Sapp1p from Candida parapsilosis in complex with the HIV protease inhibitor ritonavir

4EYR | pdb_00004eyr

Crystal structure of multidrug-resistant clinical isolate 769 HIV-1 protease in complex with ritonavir

4NJV | pdb_00004njv

Crystal structure of multidrug-resistant clinical isolate A02 HIV-1 protease in complex with ritonavir

5VC0 | pdb_00005vc0

Crystal structure of human CYP3A4 bound to ritonavir

5VCE | pdb_00005vce

Crystal structure of the cysteine depleted CYP3A4 bound to ritonavir

5VEU | pdb_00005veu

Human Cytochrome P450 3A5 (CYP3A5)

6XCY | pdb_00006xcy

Porcine pepsin in complex with ritonavir

7VE0 | pdb_00007ve0

Crystal Structure of Ritonavir bound Plasmepsin II (PMII) from Plasmodium falciparum

3TJS | pdb_00003tjs

Crystal Structure of the complex between human cytochrome P450 3A4 and desthiazolylmethyloxycarbonyl ritonavir

Prepare Data

Validate Data

Deposit Data

Help and Resources

Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1HXW | pdb_00001hxw

1N49 | pdb_00001n49

1RL8 | pdb_00001rl8

1SH9 | pdb_00001sh9

2B60 | pdb_00002b60

3NDW | pdb_00003ndw

3NDX | pdb_00003ndx

3NXU | pdb_00003nxu

3PRS | pdb_00003prs

3Q70 | pdb_00003q70

3TNE | pdb_00003tne

4EYR | pdb_00004eyr

4NJV | pdb_00004njv

5VC0 | pdb_00005vc0

5VCE | pdb_00005vce

5VEU | pdb_00005veu

6XCY | pdb_00006xcy

7VE0 | pdb_00007ve0

3TJS | pdb_00003tjs