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236,974
Structures from the PDB archive

1,068,577
Computed Structure Models (CSM)

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QUERY: BIRD Name HAS EXACT PHRASE "=beta-laminaribiose"

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Search Summary

This query matches 43 Structures.

Refinements

Structure Determination Methodology

experimental (43)

Scientific Name of Source Organism

	Halalkalibacterium halodurans C-125 (5)
	Arabidopsis thaliana (4)
	Lentinula edodes (4)
	Acetivibrio thermocellus (2)
	Aureobasidium namibiae CBS 147.97 (2)
	Homo sapiens (2)
	Oryza sativa Japonica Group (2)
	Thermoanaerobacterium xylanolyticum LX-11 (2)
	Amycolatopsis mediterranei (1)
	Bacteroides fluxus YIT 12057 (1)

More...

Taxonomy

	Eukaryota (24)
	Bacteria (17)
	Archaea (1)
	unclassified sequences (1)

Experimental Method

X-RAY DIFFRACTION (43)

Polymer Entity Type

Protein (43)

Refinement Resolution (Å)

	1.0 - 1.5 (10)
	1.5 - 2.0 (17)
	2.0 - 2.5 (12)
	2.5 - 3.0 (4)

Release Date

	2000 - 2004 (1)
	2005 - 2009 (4)
	2010 - 2014 (7)
	2015 - 2019 (13)
	2020 - 2024 (16)
	2025 - 2029 (2)

Enzyme Classification Name

	Hydrolases (20)
	Transferases (6)
	Oxidoreductases (1)

Membrane Protein Annotation

mpstruc (1)

Symmetry Type

	Asymmetric (40)
	Cyclic (4)

SCOP Classification

	All beta proteins (3)
	Alpha and beta proteins (a/b) (9)
	Alpha and beta proteins (a+b) (1)

AllSelected

1 to 25 of 43 Structures

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1OD3 \| pdb_00001od3	Download File View File

Structure of CSCBM6-3 From Clostridium stercorarium in complex with laminaribiose

Boraston, A.B., Notenboom, V., Warren, R.A.J., Kilburn, D.G., Rose, D.R., Davies, G.J.

(2003) J Mol Biology 327: 659

Released	2003-03-13
Method	X-RAY DIFFRACTION 1 Å
Organisms	Thermoclostridium stercorarium
Macromolecule	PUTATIVE XYLANASE (protein)
Unique Ligands	ACY, CA
Unique branched monosaccharides	BGC

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2BN0 \| pdb_00002bn0	Download File View File

Banana Lectin bound to Laminaribiose

Meagher, J.L., Winter, H.C., Ezell, P., Goldstein, I.J., Stuckey, J.A.

(2005) Glycobiology 15: 1033

Released	2005-06-16
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Musa acuminata
Macromolecule	RIPENING-ASSOCIATED PROTEIN (protein)
Unique Ligands	CD, SO4
Unique branched monosaccharides	BGC

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2CIP \| pdb_00002cip	Download File View File

Structure of the Michaelis complex of a family 26 lichenase

Money, V.A., Smith, N.L., Scaffidi, A., Stick, R.V., Gilbert, H.J., Davies, G.J.

(2006) Angew Chem Int Ed Engl 45: 5136

Released	2006-07-12
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Acetivibrio thermocellus
Macromolecule	ENDOGLUCANASE H (protein)
Unique Ligands	ZZ1
Unique branched monosaccharides	BGC

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2W39 \| pdb_00002w39	Download File View File

Glc(beta-1-3)Glc disaccharide in -1 and -2 sites of Laminarinase 16A from Phanerochaete chrysosporium

Vasur, J., Kawai, R., Andersson, E., Igarashi, K., Sandgren, M., Samejima, M., Stahlberg, J.

(2009) FEBS J 276: 3858

Released	2009-07-21
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Phanerodontia chrysosporium
Macromolecule	PUTATIVE LAMINARINASE (protein)
Unique Ligands	LGC, NAG
Unique branched monosaccharides	BGC

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3AHT \| pdb_00003aht	Download File View File

Crystal structure of rice BGlu1 E176Q mutant in complex with laminaribiose

Chuenchor, W., Pengthaisong, S., Robinson, R.C., Yuvaniyama, J., Svasti, J., Ketudat Cairns, J.R.

(2011) J Struct Biol 173: 169-179

Released	2010-06-02
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Beta-glucosidase 7 (protein)
Unique Ligands	MES, SO4, ZN
Unique branched monosaccharides	BGC

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3F5L \| pdb_00003f5l	Download File View File

Semi-active E176Q mutant of rice BGlu1, a plant exoglucanase/beta-glucosidase

Chuenchor, W., Ketudat Cairns, J.R., Pengthaisong, S., Robinson, R.C., Yuvaniyama, J., Chen, C.-J.

(2011) J Struct Biol 173: 169-179

Released	2009-11-03
Method	X-RAY DIFFRACTION 1.37 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Beta-glucosidase (protein)
Unique Ligands	MES, SO4, ZN
Unique branched monosaccharides	BGC

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3N9K \| pdb_00003n9k	Download File View File

F229A/E292S Double Mutant of Exo-beta-1,3-glucanase from Candida albicans in Complex with Laminaritriose at 1.7 A

Nakatani, Y., Cutfield, S.M., Cutfield, J.F.

(2010) FEBS J 277: 4549-4561

Released	2010-09-15
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Candida albicans
Macromolecule	Glucan 1,3-beta-glucosidase (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC

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3P5H \| pdb_00003p5h	Download File View File

Structure of the carbohydrate-recognition domain of human Langerin with Laminaritriose

Feinberg, H., Taylor, M.E., Razi, N., McBride, R., Knirel, Y.A., Graham, S.A., Drickamer, K., Weis, W.I.

(2011) J Mol Biology 405: 1027-1039

Released	2010-12-08
Method	X-RAY DIFFRACTION 1.6051 Å
Organisms	Homo sapiens
Macromolecule	C-type lectin domain family 4 member K (protein)
Unique Ligands	BGC, CA
Unique branched monosaccharides	BGC

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3VY6 \| pdb_00003vy6	Download File View File

Crystal structure of human pancreatic secretory protein ZG16p with laminaribiose

Kanagawa, M., Yamaguchi, Y.

(2014) J Biological Chem 289: 16954-16965

Released	2013-09-25
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Zymogen granule membrane protein 16 (protein)
Unique Ligands	CL
Unique branched monosaccharides	BGC

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3WY6 \| pdb_00003wy6	Download File View File

Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with laminaribiose

Kataoka, M., Ishikawa, K.

To be published

Released	2015-09-16
Method	X-RAY DIFFRACTION 1.45 Å
Organisms	Pyrococcus furiosus
Macromolecule	Endoglucanase A (protein)
Unique Ligands	BGC, CA, GOL, NHE
Unique branched monosaccharides	BGC

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4GZJ \| pdb_00004gzj	Download File View File

Active-site mutant of potato endo-1,3-beta-glucanase in complex with laminaratriose and laminaratetrose

Wojtkowiak, A., Witek, K., Hennig, J., Jaskolski, M.

(2013) Acta Crystallogr D Biol Crystallogr 69: 52-62

Released	2013-01-02
Method	X-RAY DIFFRACTION 1.55 Å
Organisms	Solanum tuberosum
Macromolecule	Glucan endo-1,3-beta-D-glucosidase (protein)
Unique branched monosaccharides	BGC

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4JSD \| pdb_00004jsd	Download File View File

The X-ray crystal structure of a thermophilic cellobiose binding protein bound with laminaribiose

Munshi, P., Cuneo, M.J.

(2013) BMC Struct Biol 13: 18-18

Released	2013-10-09
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein (protein)
Unique Ligands	CA
Unique branched monosaccharides	BGC

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4R2F \| pdb_00004r2f	Download File View File

Crystal structure of sugar transporter ACHL_0255 from Arthrobacter chlorophenolicus A6, target EFI-510633, with bound laminaribiose

Patskovsky, Y., Toro, R., Bhosle, R., Al Obaidi, N., Chamala, S., Attonito, J.D., Scott Glenn, A., Chowdhury, S., Lafleur, J., Siedel, R.D., Hillerich, B., Love, J., Whalen, K.L., Gerlt, J.A., Almo, S.C., Enzyme Function Initiative (EFI)

To be published

Released	2014-08-27
Method	X-RAY DIFFRACTION 2 Å
Organisms	Pseudarthrobacter chlorophenolicus A6
Macromolecule	Extracellular solute-binding protein family 1 (protein)
Unique branched monosaccharides	BGC

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4WTR \| pdb_00004wtr	Download File View File

Active-site mutant of Rhizomucor miehei beta-1,3-glucanosyltransferase in complex with laminaribiose

Qin, Z., Yan, Q., Lei, J., Yang, S., Jiang, Z.

(2015) Acta Crystallogr D Biol Crystallogr 71: 1714-1724

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Rhizomucor miehei CAU432
Macromolecule	beta-1,3-glucanosyltransferase (protein)
Unique branched monosaccharides	BGC

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5T4G \| pdb_00005t4g	Download File View File

Crystal structure of BhGH81 in complex with laminarin

Pluvinage, B., Boraston, A.B.

(2017) Structure 25: 1348-1359.e3

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Glycoside Hydrolase (protein)
Unique Ligands	EDO, PO4
Unique branched monosaccharides	BGC, GLC

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5U6N \| pdb_00005u6n	Download File View File

Crystal structure of UDP-glucosyltransferase, UGT74F2 (T15S), with UDP and salicylic acid

George Thompson, A.M., Iancu, C.V., Dean, J.V., Choe, J.

(2017) Sci Rep 7: 46629-46629

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.001 Å
Organisms	Arabidopsis thaliana
Macromolecule	UDP-glycosyltransferase 74F2 (protein)
Unique Ligands	BGC, GLN, SAL, UDP
Unique branched monosaccharides	BGC

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5U6S \| pdb_00005u6s	Download File View File

Crystal structure of UDP-glucosyltransferase, UGT74F2, with UDP and 2-bromobenzoic acid

George Thompson, A.M., Iancu, C.V., Dean, J.V., Choe, J.

(2017) Sci Rep 7: 46629-46629

Released	2017-05-03
Method	X-RAY DIFFRACTION 1.996 Å
Organisms	Arabidopsis thaliana
Macromolecule	UDP-glycosyltransferase 74F2 (protein)
Unique Ligands	7WV, BGC, UDP
Unique branched monosaccharides	BGC

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5UPI \| pdb_00005upi	Download File View File

Crystal structure of BhGH81 mutant in complex with laminaro-biose

Pluvinage, B., Boraston, A.B.

(2017) Structure

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.65 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	BH0236 protein (protein)
Unique Ligands	EDO, PO4
Unique branched monosaccharides	BGC

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5UPM \| pdb_00005upm	Download File View File

Crystal structure of BhGH81 mutant in complex with laminaro-triose

Pluvinage, B., Boraston, A.B.

(2017) Structure

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	BH0236 protein (protein)
Unique Ligands	EDO, PO4
Unique branched monosaccharides	BGC, GLC

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5UPN \| pdb_00005upn	Download File View File

Crystal structure of BhGH81 mutant in complex with laminaro-tetraose

Pluvinage, B., Boraston, A.B.

(2017) Structure

Released	2017-06-28
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	BH0236 protein (protein)
Unique Ligands	BGC, EDO, GLC, PO4
Unique branched monosaccharides	BGC

Explore in 3D

5V1W \| pdb_00005v1w	Download File View File

Crystal structure of BhGH81 in complex with laminaro-biose

Pluvinage, B., Boraston, A.B.

(2017) Structure

Released	2017-06-28
Method	X-RAY DIFFRACTION 2.15 Å
Organisms	Halalkalibacterium halodurans C-125
Macromolecule	Glycoside Hydrolase (protein)
Unique Ligands	EDO, PO4
Unique branched monosaccharides	BGC

Explore in 3D

5V2J \| pdb_00005v2j	Download File View File

Crystal structure of UDP-glucosyltransferase, UGT74F2 (T15S), with UDP and 2-bromobenzoic acid

George Thompson, A.M., Iancu, C.V., Dean, J.V., Choe, J.

(2017) Sci Rep 7: 46629-46629

Released	2017-05-03
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Arabidopsis thaliana
Macromolecule	UDP-glycosyltransferase 74F2 (protein)
Unique Ligands	7WV, BGC, UDP
Unique branched monosaccharides	BGC

Explore in 3D

5V2K \| pdb_00005v2k	Download File View File

Crystal structure of UDP-glucosyltransferase, UGT74F2 (T15A), with UDP and 2-bromobenzoic acid

George Thompson, A.M., Iancu, C.V., Dean, J.V., Choe, J.

(2017) Sci Rep 7: 46629-46629

Released	2017-05-03
Method	X-RAY DIFFRACTION 2.002 Å
Organisms	Arabidopsis thaliana
Macromolecule	UDP-glycosyltransferase 74F2 (protein)
Unique Ligands	7WV, BGC, UDP
Unique branched monosaccharides	BGC

Explore in 3D

5XC2 \| pdb_00005xc2	Download File View File

Crystal structure of GH family 81 beta-1,3-glucanase from Rhizomucr miehei complexed with laminarihexaose

Qin, Z., Yang, S., Peng, Z., Yan, Q., Jiang, Z.

To be published

Released	2018-03-28
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Rhizomucor miehei
Macromolecule	Endo-beta-1,3-glucanase (protein)
Unique branched monosaccharides	BGC

Explore in 3D

6EV2 \| pdb_00006ev2	Download File View File

Crystal structure of antibody against schizophyllan in complex with laminarihexaose

Sung, K.H., Josewski, J., Duebel, S., Blankenfeldt, W., Rau, U.

(2018) Sci Rep 8: 13652-13652

Released	2018-09-26
Method	X-RAY DIFFRACTION 2.403 Å
Organisms	Mus musculus
Macromolecule	Heavy chain (protein) Light chain (protein)
Unique Ligands	BGC
Unique branched monosaccharides	BGC

1 to 25 of 43 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1OD3 | pdb_00001od3

2BN0 | pdb_00002bn0

2CIP | pdb_00002cip

2W39 | pdb_00002w39

3AHT | pdb_00003aht

3F5L | pdb_00003f5l

3N9K | pdb_00003n9k

3P5H | pdb_00003p5h

3VY6 | pdb_00003vy6

3WY6 | pdb_00003wy6

4GZJ | pdb_00004gzj

4JSD | pdb_00004jsd

4R2F | pdb_00004r2f

4WTR | pdb_00004wtr

5T4G | pdb_00005t4g

5U6N | pdb_00005u6n

5U6S | pdb_00005u6s

5UPI | pdb_00005upi

5UPM | pdb_00005upm

5UPN | pdb_00005upn

5V1W | pdb_00005v1w

5V2J | pdb_00005v2j

5V2K | pdb_00005v2k

5XC2 | pdb_00005xc2

6EV2 | pdb_00006ev2