Download MendeleyStructure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with laminaribiose
Kataoka, M., Ishikawa, K.To be published.
3WY6
Structure of hyperthermophilic family 12 endocellulase (E197A) from Pyrococcus furiosus in complex with laminaribiose
- PDB DOI: https://doi.org/10.2210/pdb3WY6/pdb
- Classification: HYDROLASE
- Organism(s): Pyrococcus furiosus
- Expression System: Escherichia coli
- Mutation(s): Yes
- Deposited: 2014-08-20 Released: 2015-09-16
Experimental Data Snapshot
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.178
- R-Value Work: 0.126
- R-Value Observed: 0.128
This is version 2.0 of the entry. See complete history.
Literature
To be published.
Macromolecules
Find similar proteins by:
(by identity cutoff) | 3D Structure
Entity ID: 1 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Sequence Length | Organism | Details | Image |
| Endoglucanase A | 319 | Pyrococcus furiosus | Mutation(s): 1 Gene Names: eglA EC: 3.2.1.4 |  | |
UniProt | |||||
Find proteins for Q9V2T0 (Pyrococcus furiosus) Explore Q9V2T0 Go to UniProtKB: Q9V2T0 | |||||
Entity Groups | |||||
| Sequence Clusters | 30% Identity50% Identity70% Identity90% Identity95% Identity100% Identity | ||||
| UniProt Group | Q9V2T0 | ||||
Protein Feature ViewExpand | |||||
| |||||
Oligosaccharides
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| Molecule | Chains | Chain Length | 2D Diagram | Glycosylation | 3D Interactions |
| beta-D-glucopyranose-(1-3)-beta-D-glucopyranose | B | 2 |  | N/A | Oligosaccharides Interaction |
Glycosylation Resources | |||||
GlyTouCan: G36535HU GlyCosmos: G36535HU | |||||
Small Molecules
| Ligands 4 Unique | |||||
|---|---|---|---|---|---|
| ID | Chains | Name / Formula / InChI Key | 2D Diagram | 3D Interactions | |
| NHE Query on NHE | E [auth A], F [auth A], G [auth A], H [auth A] | 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID C8 H17 N O3 S MKWKNSIESPFAQN-UHFFFAOYSA-N |  | Ligand Interaction | |
| BGC Query on BGC | I [auth A] | beta-D-glucopyranose C6 H12 O6 WQZGKKKJIJFFOK-VFUOTHLCSA-N |  | Ligand Interaction | |
| GOL Query on GOL | J [auth A] K [auth A] L [auth A] M [auth A] N [auth A] | GLYCEROL C3 H8 O3 PEDCQBHIVMGVHV-UHFFFAOYSA-N |  | Ligand Interaction | |
| CA Query on CA | C [auth A], D [auth A] | CALCIUM ION Ca BHPQYMZQTOCNFJ-UHFFFAOYSA-N |  | Ligand Interaction | |
Biologically Interesting Molecules (External Reference) 1 Unique
Entity ID: 2 | |||||
|---|---|---|---|---|---|
| ID | Chains | Name | Type/Class | 2D Diagram | 3D Interactions |
| PRD_900024 Query on PRD_900024 | B | beta-laminaribiose | Oligosaccharide / Antimicrobial |  | Ligand Interaction |
Experimental Data & Validation
Experimental Data
- Method: X-RAY DIFFRACTION
- Resolution: 1.45 Å
- R-Value Free: 0.178
- R-Value Work: 0.126
- R-Value Observed: 0.128
- Space Group: P 21 21 2
Unit Cell:
| Length ( Å ) | Angle ( ˚ ) |
|---|---|
| a = 58.03 | α = 90 |
| b = 118.865 | β = 90 |
| c = 46.873 | γ = 90 |
| Software Name | Purpose |
|---|---|
| SCALEPACK | data scaling |
| MOLREP | phasing |
| REFMAC | refinement |
| PDB_EXTRACT | data extraction |
| HKL-2000 | data collection |
| HKL-2000 | data reduction |
Entry History
Deposition Data
- Released Date: 2015-09-16 Deposition Author(s): Kataoka, M., Ishikawa, K.
Revision History (Full details and data files)
- Version 1.0: 2015-09-16
Type: Initial release - Version 2.0: 2020-07-29
Type: Remediation
Reason: Carbohydrate remediation
Changes: Atomic model, Data collection, Database references, Derived calculations, Structure summary
