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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 99 Structures.

Refinements

Structure Determination Methodology

experimental (99)

Scientific Name of Source Organism

	Blastochloris viridis (21)
	Halobacterium salinarum NRC-1 (21)
	Natronomonas pharaonis (10)
	Gallus gallus (7)
	Cereibacter sphaeroides (6)
	Spinacia oleracea (6)
	Bos taurus (5)
	Sus scrofa (5)
	Homo sapiens (4)
	Komagataella pastoris (4)

More...

Taxonomy

	Archaea (35)
	Bacteria (34)
	Eukaryota (30)
	other sequences (1)

Experimental Method

X-RAY DIFFRACTION (99)

Polymer Entity Type

Protein (99)

Refinement Resolution (Å)

	0.5 - 1.0 (2)
	1.0 - 1.5 (4)
	1.5 - 2.0 (26)
	2.0 - 2.5 (44)
	2.5 - 3.0 (12)
	3.0 - 3.5 (3)
	3.5 - 4.0 (6)
	> 4.5 (2)

Release Date

	1995 - 1999 (2)
	2000 - 2004 (11)
	2005 - 2009 (16)
	2010 - 2014 (15)
	2015 - 2019 (29)
	2020 - 2024 (21)
	2025 - 2029 (5)

Enzyme Classification Name

	Hydrolases (13)
	Translocases (5)
	Oxidoreductases (5)
	Lyases (1)

Membrane Protein Annotation

	PDBTM (80)
	MemProtMD (69)
	mpstruc (49)
	OPM (10)

Symmetry Type

	Asymmetric (56)
	Cyclic (44)

SCOP Classification

	Membrane and cell surface proteins and peptides (52)
	All beta proteins (25)
	All alpha proteins (13)
	Alpha and beta proteins (a+b) (8)
	Artifacts (2)

AllSelected

1 to 25 of 99 Structures

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1E0P \| pdb_00001e0p	Download File View File

L intermediate of bacteriorhodopsin

Royant, A., Edman, K., Ursby, T., Pebay-Peyroula, E., Landau, E.M., Neutze, R.

(2000) Nature 406: 645

Released	2000-08-19
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN, GROUND STATE (protein)
Unique Ligands	RET

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1GU8 \| pdb_00001gu8	Download File View File

SENSORY RHODOPSIN II

Edman, K., Royant, A., Nollert, P., Maxwell, C.A., Pebay-Peyroula, E., Navarro, J., Neutze, R., Landau, E.M.

(2002) Structure 10: 473

Released	2002-04-12
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Natronomonas pharaonis
Macromolecule	SENSORY RHODOPSIN II (protein)
Unique Ligands	CL, RET

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1GUE \| pdb_00001gue	Download File View File

SENSORY RHODOPSIN II

Edman, K., Royant, A., Nollert, P., Maxwell, C.A., Pebay-Peyroula, E., Navarro, J., Neutze, R., Landau, E.M.

(2002) Structure 10: 473

Released	2002-04-12
Method	X-RAY DIFFRACTION 2.27 Å
Organisms	Natronomonas pharaonis
Macromolecule	SENSORY RHODOPSIN II (protein)
Unique Ligands	CL, RET

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1GVK \| pdb_00001gvk	Download File View File

Porcine pancreatic elastase acyl enzyme at 0.95 A resolution

Katona, G., Wilmouth, R.C., Wright, P.A., Berglund, G.I., Hajdu, J., Neutze, R., Schofield, C.J.

(2002) J Biological Chem 277: 21962

Released	2002-07-19
Method	X-RAY DIFFRACTION 0.94 Å
Organisms	Sus scrofa synthetic construct
Macromolecule	ELASTASE 1 (protein) PEPTIDE INHIBITOR (protein)
Unique Ligands	CA, SO4

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1H68 \| pdb_00001h68	Download File View File

sensory rhodopsin II

Royant, A., Nollert, P., Edman, K., Neutze, R., Landau, E.M., Pebay-Peyroula, E., Navarro, J.

(2001) Proc Natl Acad Sci U S A 98: 10131

Released	2001-08-28
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Natronomonas pharaonis
Macromolecule	SENSORY RHODOPSIN II (protein)
Unique Ligands	CL, RET

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1HAX \| pdb_00001hax	Download File View File

Snapshots of serine protease catalysis: (A) acyl-enzyme intermediate between porcine pancreatic elastase and human beta-casomorphin-7 at pH 5

Wilmouth, R.C., Edman, K., Neutze, R., Wright, P.A., Clifton, I.J., Schneider, T.R., Schofield, C.J., Hajdu, J.

(2001) Nat Struct Biol 8: 689

Released	2001-08-02
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	BETA-CASOMORPHIN-7 (protein) ELASTASE 1 (protein)
Unique Ligands	CA, SO4

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1HAY \| pdb_00001hay	Download File View File

Snapshots of serine protease catalysis: (B) acyl-enzyme intermediate between porcine pancreatic elastase and human beta-casomorphin-7 jumped to pH 10 for 10 seconds

Wilmouth, R.C., Edman, K., Neutze, R., Wright, P.A., Clifton, I.J., Schneider, T.R., Schofield, C.J., Hajdu, J.

(2001) Nat Struct Biol 8: 689

Released	2001-08-02
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Sus scrofa
Macromolecule	ELASTASE 1 (protein)
Unique Ligands	CA, SO4

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1HAZ \| pdb_00001haz	Download File View File

Snapshots of serine protease catalysis: (C) acyl-enzyme intermediate between porcine pancreatic elastase and human beta-casomorphin-7 jumped to pH 9 for 1 minute

Wilmouth, R.C., Edman, K., Neutze, R., Wright, P.A., Clifton, I.J., Schneider, T.R., Schofield, C.J., Hajdu, J.

(2001) Nat Struct Biol 8: 689

Released	2001-08-02
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Homo sapiens Sus scrofa
Macromolecule	BETA-CASOMORPHIN-7 (protein) ELASTASE 1 (protein)
Unique Ligands	CA, SO4

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1HB0 \| pdb_00001hb0	Download File View File

Snapshots of serine protease catalysis: (D) acyl-enzyme intermediate between porcine pancreatic elastase and human beta-casomorphin-7 jumped to pH 10 for 2 minutes

Wilmouth, R.C., Edman, K., Neutze, R., Wright, P.A., Clifton, I.J., Schneider, T.R., Schofield, C.J., Hajdu, J.

(2001) Nat Struct Biol 8: 689

Released	2001-08-02
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Sus scrofa
Macromolecule	ELASTASE 1 (protein)
Unique Ligands	CA, SO4

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1OGV \| pdb_00001ogv	Download File View File

Lipidic cubic phase crystal structure of the photosynthetic reaction centre from Rhodobacter sphaeroides

Katona, G., Andreasson, U., Landau, E.M., Andreasson, L.-E., Neutze, R.

(2003) J Mol Biology 331: 681

Released	2003-08-05
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE2, U10

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1QKO \| pdb_00001qko	Download File View File

HIGH RESOLUTION X-RAY STRUCTURE OF AN EARLY INTERMEDIATE IN THE BACTERIORHODOPSIN PHOTOCYCLE

Edman, K., Nollert, P., Royant, A., Belrhali, H., Pebay-Peyroula, E., Hajdu, J., Neutze, R., Landau, E.M.

(1999) Nature 401: 822

Released	1999-10-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1QKP \| pdb_00001qkp	Download File View File

HIGH RESOLUTION X-RAY STRUCTURE OF AN EARLY INTERMEDIATE IN THE BACTERIORHODOPSIN PHOTOCYCLE

Edman, K., Nollert, P., Royant, A., Belrhali, H., Pebay-Peyroula, E., Hajdu, J., Neutze, R., Landau, E.M.

(1999) Nature 401: 822-826

Released	1999-10-24
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Halobacterium salinarum
Macromolecule	BACTERIORHODOPSIN (protein)
Unique Ligands	RET

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1VJM \| pdb_00001vjm	Download File View File

Deformation of helix C in the low-temperature L-intermediate of bacteriorhodopsin

Edman, K., Royant, A., Larsson, G., Jacobson, F., Taylor, T., van der Spoel, D., Landau, E.M., Pebay-Peyroula, E., Neutze, R.

(2004) J Biological Chem 279: 2147-2158

Released	2004-04-06
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Halobacterium sp.
Macromolecule	Bacteriorhodopsin (protein)
Unique Ligands	RET

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1Z98 \| pdb_00001z98	Download File View File

Crystal structure of the spinach aquaporin SoPIP2;1 in a closed conformation

Tornroth-Horsefield, S., Hedfalk, K., Johanson, U., Karlsson, M., Neutze, R., Kjellbom, P.

(2006) Nature 439: 688-694

Released	2005-12-20
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Spinacia oleracea
Macromolecule	aquaporin (protein)
Unique Ligands	CD

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1ZV2 \| pdb_00001zv2	Download File View File

Cu-containing nitrite reductase

Jacobson, F., Guo, H., Olesen, K., Okvist, M., Neutze, R., Sjolin, L.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1190-1198

Released	2005-06-21
Method	X-RAY DIFFRACTION 1.74 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, MG

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2A3T \| pdb_00002a3t	Download File View File

Cu-containing nitrite reductase

Jacobson, F., Guo, H., Olesen, K., Okvist, M., Neutze, R., Sjolin, L.

(2005) Acta Crystallogr D Biol Crystallogr 61: 1190-1198

Released	2005-08-02
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Copper-containing nitrite reductase (protein)
Unique Ligands	CU, MG

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2B5F \| pdb_00002b5f	Download File View File

Crystal structure of the spinach aquaporin SoPIP2;1 in an open conformation to 3.9 resolution

Tornroth-Horsefield, S., Wang, Y., Hedfalk, K., Johanson, U., Karlsson, M., Tajkhorshid, E., Neutze, R., Kjellbom, P.

(2006) Nature 439: 688-694

Released	2005-12-20
Method	X-RAY DIFFRACTION 3.9 Å
Organisms	Spinacia oleracea
Macromolecule	aquaporin (protein)

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2BNP \| pdb_00002bnp	Download File View File

Lipidic cubic phase grown reaction centre from Rhodobacter sphaeroides, ground state

Katona, G., Snijder, A., Gourdon, P., Andreasson, U., Hansson, O., Andreasson, L.E., Neutze, R.

(2005) Nat Struct Mol Biol 12: 630

Released	2005-05-27
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CL, FE2, MST, PO4, U10

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2BNS \| pdb_00002bns	Download File View File

Lipidic cubic phase grown reaction centre from Rhodobacter sphaeroides, excited state

Katona, G., Snijder, A., Gourdon, P., Andreasson, U., Hansson, O., Andreasson, L.E., Neutze, R.

(2005) Nat Struct Mol Biol 12: 630

Released	2005-05-27
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CL, FE2, MST, PO4, U10

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2GNU \| pdb_00002gnu	Download File View File

The crystallization of reaction center from Rhodobacter sphaeroides occurs via a new route

Wadsten, P., Woehri, A.B., Snijder, A., Katona, G., Gardiner, A.T., Cogdell, R.J., Neutze, R., Engstroem, S.

(2006) J Mol Biology 364: 44-53

Released	2006-11-07
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Cereibacter sphaeroides
Macromolecule	Reaction center protein H chain (protein) Reaction center protein L chain (protein) Reaction center protein M chain (protein)
Unique Ligands	BCL, BPH, CDL, CL, FE2, LDA, U10

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2RDD \| pdb_00002rdd	Download File View File

X-ray crystal structure of AcrB in complex with a novel transmembrane helix.

Tornroth-Horsefield, S., Gourdon, P., Horsefield, R., Neutze, R.

(2007) Structure 15: 1663-1673

Released	2007-12-11
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Escherichia coli
Macromolecule	Acriflavine resistance protein B (protein) UPF0092 membrane protein yajC (protein)
Unique Ligands	AIC

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2W1P \| pdb_00002w1p	Download File View File

1.4 Angstrom crystal structure of P.pastoris aquaporin, Aqy1, in a closed conformation at pH 8.0

Fischer, G., Kosinska-Eriksson, U., Aponte-Santamaria, C., Palmgren, M., Geijer, C., Hedfalk, K., Hohmann, S., de Groot, B.L., Neutze, R., Lindkvist-Petersson, K.

(2009) PLoS Biol 7: 130

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Komagataella pastoris
Macromolecule	AQUAPORIN PIP2-7 7; (protein)
Unique Ligands	BOG, CL

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2W2E \| pdb_00002w2e	Download File View File

1.15 Angstrom crystal structure of P.pastoris aquaporin, Aqy1, in a closed conformation at pH 3.5

Fischer, G., Kosinska-Eriksson, U., Aponte-Santamaria, C., Palmgren, M., Geijer, C., Hedfalk, K., Hohmann, S., de Groot, B.L., Neutze, R., Lindkvist-Petersson, K.

(2009) PLoS Biol 7: E130

Released	2009-06-16
Method	X-RAY DIFFRACTION 1.15 Å
Organisms	Komagataella pastoris
Macromolecule	AQUAPORIN PIP2-7 7 (protein)
Unique Ligands	BOG, CL

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2WJM \| pdb_00002wjm	Download File View File

Lipidic sponge phase crystal structure of the photosynthetic reaction centre from Blastochloris viridis (low dose)

Woehri, A.B., Wahlgren, W.Y., Malmerberg, E., Johansson, L.C., Neutze, R., Katona, G.

(2009) Biochemistry 48: 9831-9838

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Blastochloris viridis
Macromolecule	PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT (protein) REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCB, BPB, DGA, FE2, HEC, MPG, MQ7, NS5, PO4

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2WJN \| pdb_00002wjn	Download File View File

Lipidic sponge phase crystal structure of photosynthetic reaction centre from Blastochloris viridis (high dose)

Wohri, A.B., Wahlgren, W.Y., Malmerberg, E., Johansson, L.C., Neutze, R., Katona, G.

(2009) Biochemistry 48: 9831-9838

Released	2009-09-22
Method	X-RAY DIFFRACTION 1.86 Å
Organisms	Blastochloris viridis
Macromolecule	PHOTOSYNTHETIC REACTION CENTER CYTOCHROME C SUBUNIT (protein) REACTION CENTER PROTEIN H CHAIN (protein) REACTION CENTER PROTEIN L CHAIN (protein) REACTION CENTER PROTEIN M CHAIN (protein)
Unique Ligands	BCB, BPB, FE2, HEC, MPG, MQ7, NS5

1 to 25 of 99 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1E0P | pdb_00001e0p

1GU8 | pdb_00001gu8

1GUE | pdb_00001gue

1GVK | pdb_00001gvk

1H68 | pdb_00001h68

1HAX | pdb_00001hax

1HAY | pdb_00001hay

1HAZ | pdb_00001haz

1HB0 | pdb_00001hb0

1OGV | pdb_00001ogv

1QKO | pdb_00001qko

1QKP | pdb_00001qkp

1VJM | pdb_00001vjm

1Z98 | pdb_00001z98

1ZV2 | pdb_00001zv2

2A3T | pdb_00002a3t

2B5F | pdb_00002b5f

2BNP | pdb_00002bnp

2BNS | pdb_00002bns

2GNU | pdb_00002gnu

2RDD | pdb_00002rdd

2W1P | pdb_00002w1p

2W2E | pdb_00002w2e

2WJM | pdb_00002wjm

2WJN | pdb_00002wjn