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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 398 Structures.

Refinements

Structure Determination Methodology

experimental (398)

Scientific Name of Source Organism

	Homo sapiens (73)
	Thermosynechococcus vestitus BP-1 (57)
	Thermostichus vulcanus (42)
	Acinetobacter baumannii (16)
	Rattus norvegicus (14)
	Synechocystis sp. PCC 6803 substr. Kazusa (9)
	Bos taurus (8)
	Synechocystis sp. PCC 6803 (7)
	Chlamydomonas reinhardtii (6)
	Megalodesulfovibrio gigas (6)

More...

Taxonomy

	Bacteria (236)
	Eukaryota (154)
	Archaea (8)
	other sequences (6)
	Riboviria (2)
	Eukaryota (eukaryotes) (1)

Experimental Method

	X-RAY DIFFRACTION (338)
	ELECTRON MICROSCOPY (60)

Polymer Entity Type

	Protein (397)
	DNA (1)

Refinement Resolution (Å)

	0.5 - 1.0 (4)
	1.0 - 1.5 (31)
	1.5 - 2.0 (119)
	2.0 - 2.5 (150)
	2.5 - 3.0 (52)
	3.0 - 3.5 (15)
	3.5 - 4.0 (15)
	4.0 - 4.5 (2)
	> 4.5 (10)

Release Date

	1990 - 1994 (4)
	1995 - 1999 (4)
	2000 - 2004 (9)
	2005 - 2009 (36)
	2010 - 2014 (70)
	2015 - 2019 (108)
	2020 - 2024 (161)
	2025 - 2029 (6)

Enzyme Classification Name

	Oxidoreductases (190)
	Lyases (58)
	Hydrolases (52)
	Transferases (22)
	Translocases (2)
	Ligases (11)
	Isomerases (4)

Membrane Protein Annotation

	PDBTM (109)
	mpstruc (62)
	OPM (42)
	MemProtMD (40)

Symmetry Type

	Asymmetric (171)
	Cyclic (188)
	Dihedral (41)
	Tetrahedral (3)

SCOP Classification

	Membrane and cell surface proteins and peptides (38)
	Alpha and beta proteins (a/b) (48)
	Alpha and beta proteins (a+b) (32)
	All alpha proteins (49)
	All beta proteins (49)
	Artifacts (21)
	Multi-domain proteins (alpha and beta) (12)

AllSelected

1 to 25 of 398 Structures

Page 1 of 16

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1BIC \| pdb_00001bic	Download File View File

CRYSTALLOGRAPHIC ANALYSIS OF THR-200-> HIS HUMAN CARBONIC ANHYDRASE II AND ITS COMPLEX WITH THE SUBSTRATE, HCO3-

Xue, Y., Vidgren, J., Svensson, L.A., Liljas, A., Jonsson, B.-H., Lindskog, S.

(1993) Proteins 15: 80-87

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE II (protein)
Unique Ligands	BCT, MMC, ZN

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1BVT \| pdb_00001bvt	Download File View File

METALLO-BETA-LACTAMASE FROM BACILLUS CEREUS 569/H/9

Carfi, A., Duee, E., Dideberg, O.

(1998) Acta Crystallogr D Biol Crystallogr 54: 313-323

Released	1998-09-23
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacillus cereus
Macromolecule	PROTEIN (BETA-LACTAMASE) (protein)
Unique Ligands	BCT, ZN

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1CAH \| pdb_00001cah	Download File View File

STRUCTURE OF COBALT CARBONIC ANHYDRASE COMPLEXED WITH BICARBONATE

Hakansson, K., Wehnert, A.

(1992) J Mol Biology 228: 1212-1218

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.88 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE II (protein)
Unique Ligands	BCT, CO

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1CAM \| pdb_00001cam	Download File View File

STRUCTURAL ANALYSIS OF THE ZINC HYDROXIDE-THR 199-GLU 106 HYDROGEN BONDING NETWORK IN HUMAN CARBONIC ANHYDRASE II

Xue, Y., Liljas, A., Jonsson, B.-H., Lindskog, S.

(1993) Proteins 17: 93-106

Released	1993-10-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE II (protein)
Unique Ligands	BCT, ZN

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1CL1 \| pdb_00001cl1	Download File View File

CYSTATHIONINE BETA-LYASE (CBL) FROM ESCHERICHIA COLI

Clausen, T., Huber, R., Messerschmidt, A.

(1996) J Mol Biology 262: 202-224

Released	1998-09-09
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Escherichia coli K-12
Macromolecule	CYSTATHIONINE BETA-LYASE (protein)
Unique Ligands	BCT

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1DXK \| pdb_00001dxk	Download File View File

Metallo-beta-lactamase from Bacillus cereus 569/H/9 C168S mutant

Chantalat, L., Duee, E., Dideberg, O.

(2000) Protein Sci 9: 1402-1406

Released	2000-08-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Bacillus cereus
Macromolecule	CLASS B BETA-LACTAMASE (protein)
Unique Ligands	BCT, ZN

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1F9B \| pdb_00001f9b	Download File View File

MELANIN PROTEIN INTERACTION: X-RAY STRUCTURE OF THE COMPLEX OF MARE LACTOFERRIN WITH MELANIN MONOMERS

Kumar, S., Singh, T.P., Sharma, A.K., Singh, N., Raman, G.

(2001) Proteins 45: 229-236

Released	2001-02-10
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Equus caballus
Macromolecule	LACTOTRANSFERRIN (protein)
Unique Ligands	3ID, BCT, FE

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1HCB \| pdb_00001hcb	Download File View File

ENZYME-SUBSTRATE INTERACTIONS: STRUCTURE OF HUMAN CARBONIC ANHYDRASE I COMPLEXED WITH BICARBONATE

Kumar, V., Kannan, K.K.

(1994) J Mol Biology 241: 226-232

Released	1994-04-30
Method	X-RAY DIFFRACTION 1.6 Å
Organisms	Homo sapiens
Macromolecule	CARBONIC ANHYDRASE I (protein)
Unique Ligands	BCT, ZN

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1JF8 \| pdb_00001jf8	Download File View File

X-ray structure of reduced C10S, C15A arsenate reductase from pI258

Zegers, I., Martins, J.C., Willem, R., Wyns, L., Messens, J.

(2001) Nat Struct Biol 8: 843-847

Released	2001-10-03
Method	X-RAY DIFFRACTION 1.12 Å
Organisms	Staphylococcus aureus
Macromolecule	arsenate reductase (protein)
Unique Ligands	BCT, K, TRS

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1LGD \| pdb_00001lgd	Download File View File

Crystal Structure Analysis of HCA II Mutant T199P in Complex with Bicarbonate

Huang, S., Sjoblom, B., Sauer-Eriksson, A.E., Jonsson, B.-H.

(2002) Biochemistry 41: 7628-7635

Released	2002-07-24
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Carbonic anhydrase II (protein)
Unique Ligands	BCT, ZN

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1LI0 \| pdb_00001li0	Download File View File

Crystal structure of TEM-32 beta-Lactamase at 1.6 Angstrom

Wang, X., Minasov, G., Shoichet, B.K.

(2002) J Biological Chem 277: 32149-32156

Released	2002-09-11
Method	X-RAY DIFFRACTION 1.61 Å
Organisms	Escherichia coli
Macromolecule	Class A beta-Lactamase- TEM-32 (protein)
Unique Ligands	BCT, K

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1MZ4 \| pdb_00001mz4	Download File View File

Crystal Structure of Cytochrome c550 from Thermosynechococcus elongatus

Kerfeld, C.A., Sawaya, M.R., Bottin, H., Tran, K.T., Sugiura, M., Kirilovsky, D., Krogmann, D., Yeates, T.O., Boussac, A.

(2003) Plant Cell Physiol 44: 697-706

Released	2003-09-23
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Thermosynechococcus vestitus
Macromolecule	cytochrome c550 (protein)
Unique Ligands	BCT, GOL, HEC, PO4

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1OAO \| pdb_00001oao	Download File View File

NiZn[Fe4S4] and NiNi[Fe4S4] clusters in closed and open alpha subunits of acetyl-CoA synthase/carbon monoxide dehydrogenase

Darnault, C., Volbeda, A., Kim, E.J., Legrand, P., Vernede, X., Lindahl, P.A., Fontecilla-Camps, J.C.

(2003) Nat Struct Biol 10: 271

Released	2003-04-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Moorella thermoacetica
Macromolecule	CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE SUBUNIT ALPHA (protein) CARBON MONOXIDE DEHYDROGENASE/ACETYL-COA SYNTHASE SUBUNIT BETA (protein)
Unique Ligands	ACT, BCT, FE2, FOR, GOL, NI, SF4, SO4, SX, XCC, ZN

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1QRE \| pdb_00001qre	Download File View File

A CLOSER LOOK AT THE ACTIVE SITE OF GAMMA-CARBONIC ANHYDRASES: HIGH RESOLUTION CRYSTALLOGRAPHIC STUDIES OF THE CARBONIC ANHYDRASE FROM METHANOSARCINA THERMOPHILA

Iverson, T.M., Alber, B.E., Kisker, C., Ferry, J.G., Rees, D.C.

(2000) Biochemistry 39: 9222-9231

Released	1999-06-25
Method	X-RAY DIFFRACTION 1.46 Å
Organisms	Methanosarcina thermophila
Macromolecule	CARBONIC ANHYDRASE (protein)
Unique Ligands	BCT, CO

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1QRL \| pdb_00001qrl	Download File View File

A CLOSER LOOK AT THE ACTIVE SITE OF GAMMA-CARBONIC ANHYDRASES: HIGH RESOLUTION CRYSTALLOGRAPHIC STUDIES OF THE CARBONIC ANHYDRASE FROM METHANOSARCINA THERMOPHILA

Iverson, T.M., Alber, B.E., Kisker, C., Ferry, J.G., Rees, D.C.

(2000) Biochemistry 39: 9222-9231

Released	1999-06-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Methanosarcina thermophila
Macromolecule	CARBONIC ANHYDRASE (protein)
Unique Ligands	BCT, ZN

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1S5L \| pdb_00001s5l	Download File View File

Architecture of the photosynthetic oxygen evolving center

Ferreira, K.N., Iverson, T.M., Maghlaoui, K., Barber, J., Iwata, S.

(2004) Science 303: 1831-1838

Released	2004-02-24
Method	X-RAY DIFFRACTION 3.5 Å
Organisms	Thermosynechococcus vestitus
Macromolecule	Unique protein chains: 19
Unique Ligands	BCR, BCT, CLA, FE, HEC, LMT, OEC, PHO, PL9

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1V67 \| pdb_00001v67	Download File View File

Structure of ferripyochelin binding protein from pyrococcus horikoshii OT3

Jeyakanthan, J., Tahirov, T.H., RIKEN Structural Genomics/Proteomics Initiative (RSGI)

(2008) Acta Crystallogr D Biol Crystallogr 64: 1012-1019

Released	2003-12-09
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Pyrococcus horikoshii OT3
Macromolecule	ferripyochelin binding protein (protein)
Unique Ligands	BCT, CA, ZN

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1VRG \| pdb_00001vrg	Download File View File

Crystal structure of propionyl-CoA carboxylase, beta subunit (TM0716) from THERMOTOGA MARITIMA at 2.30 A resolution

Joint Center for Structural Genomics (JCSG)

To be published

Released	2005-03-08
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Thermotoga maritima MSB8
Macromolecule	propionyl-CoA carboxylase, beta subunit (protein)
Unique Ligands	BCT, MG

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1YQW \| pdb_00001yqw	Download File View File

Structure of the Oxidized Unready Form of Ni-Fe Hydrogenase

Volbeda, A.

(2005) J Biol Inorg Chem 10: 239-249

Released	2005-04-19
Method	X-RAY DIFFRACTION 1.83 Å
Organisms	Solidesulfovibrio fructosivorans
Macromolecule	Periplasmic [NiFe] hydrogenase large subunit (protein) Periplasmic [NiFe] hydrogenase small subunit (protein)
Unique Ligands	BCT, F3S, FCO, FE2, GOL, MG, NI, PER, SF4

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1ZML \| pdb_00001zml	Download File View File

Crystal Structure of the Catalytic Domain of Factor XI in complex with (R)-1-(4-(4-(hydroxymethyl)-1,3,2-dioxaborolan-2-yl)phenethyl)guanidine

Lazarova, T.I., Jin, L., Rynkiewicz, M.J., Gorga, J.C., Bibbins, F., Meyers, H.V., Babine, R.E., Strickler, J.E.

(2006) Bioorg Med Chem Lett 16: 5022-5027

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.25 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	412, BCT, SO4

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1ZSJ \| pdb_00001zsj	Download File View File

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in complex with N-(7-Carbamimidoyl-naphthalen-1-yl)-3-hydroxy-2-methyl-benzamide

Guo, Z., Bannister, T., Noll, R., Jin, L., Rynkiewicz, M., Bibbins, F., Magee, S., Gorga, J., Babine, R.E., Strickler, J.E., Meyers, H.V., Abdel-Meguid, S.S.

To be published

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	709, BCT, SO4

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1ZSK \| pdb_00001zsk	Download File View File

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 6-Carbamimidoyl-4-(3-hydroxy-2-methyl-benzoylamino)-naphthalene-2-carboxylic acid methyl ester

Guo, Z., Bannister, T., Noll, R., Jin, L., Rynkiewicz, M., Bibbins, F., Magee, S., Gorga, J., Babine, R.E., Strickler, J.E., Meyers, H.V., Abdel-Meguid, S.S.

To be published

Released	2006-05-23
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	421, BCT, SO4

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1ZTJ \| pdb_00001ztj	Download File View File

Crystal Structure of the Catalytic Domain of Coagulation Factor XI in Complex with 2-(5-Benzylamino-2-methylsulfanyl-6-oxo-6H-pyrimidin-1-yl)-N-[4-guanidino-1-(thiazole-2-carbonyl)-butyl]-acetamide

Nagafuji, P., Jin, L., Rynkiewicz, M., Quinn, J., Bibbins, F., Meyers, H., Babine, R.E., Strickler, J.E., Abdel-Meguid, S.S.

To be published

Released	2006-05-09
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Homo sapiens
Macromolecule	Coagulation factor XI (protein)
Unique Ligands	632, BCT, SO4

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2A8D \| pdb_00002a8d	Download File View File

Haemophilus influenzae beta-carbonic anhydrase complexed with bicarbonate

Cronk, J.D., Rowlett, R.S., Zhang, K.Y.J., Tu, C., Endrizzi, J.A., Lee, J., Gareiss, P.C., Preiss, J.R.

(2006) Biochemistry 45: 4351-4361

Released	2006-04-18
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Haemophilus influenzae
Macromolecule	Carbonic anhydrase 2 (protein)
Unique Ligands	BCT, SO4, ZN

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2AXT \| pdb_00002axt	Download File View File

Crystal Structure of Photosystem II from Thermosynechococcus elongatus

Loll, B., Kern, J., Saenger, W., Zouni, A., Biesiadka, J.

(2005) Nature 438: 1040-1044

Released	2005-12-27
Method	X-RAY DIFFRACTION 3 Å
Organisms	Thermosynechococcus vestitus Thermosynechococcus vestitus BP-1
Macromolecule	Unique protein chains: 18
Unique Ligands	BCR, BCT, CA, CLA, DGD, FE2, HEM, LHG, LMT, MGE, OEC, PHO, PQ9, SQD, UNL

1 to 25 of 398 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1BIC | pdb_00001bic

1BVT | pdb_00001bvt

1CAH | pdb_00001cah

1CAM | pdb_00001cam

1CL1 | pdb_00001cl1

1DXK | pdb_00001dxk

1F9B | pdb_00001f9b

1HCB | pdb_00001hcb

1JF8 | pdb_00001jf8

1LGD | pdb_00001lgd

1LI0 | pdb_00001li0

1MZ4 | pdb_00001mz4

1OAO | pdb_00001oao

1QRE | pdb_00001qre

1QRL | pdb_00001qrl

1S5L | pdb_00001s5l

1V67 | pdb_00001v67

1VRG | pdb_00001vrg

1YQW | pdb_00001yqw

1ZML | pdb_00001zml

1ZSJ | pdb_00001zsj

1ZSK | pdb_00001zsk

1ZTJ | pdb_00001ztj

2A8D | pdb_00002a8d

2AXT | pdb_00002axt