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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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Search Summary

This query matches 15 Structures.

Refinements

Structure Determination Methodology

experimental (15)

Scientific Name of Source Organism

	Homo sapiens (7)
	Escherichia coli (2)
	Aspergillus fumigatus (1)
	Gallus gallus (1)
	Mus musculus (1)
	Pseudomonas putida (1)
	Severe acute respiratory syndrome coronavirus 2 (1)
	synthetic construct (1)

Taxonomy

	Eukaryota (10)
	Bacteria (3)
	Riboviria (1)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (13)
	SOLUTION NMR (2)

Polymer Entity Type

	Protein (12)
	RNA (3)

Refinement Resolution (Å)

	1.0 - 1.5 (3)
	1.5 - 2.0 (2)
	2.0 - 2.5 (7)
	3.0 - 3.5 (1)

Release Date

	1995 - 1999 (1)
	2000 - 2004 (1)
	2005 - 2009 (1)
	2010 - 2014 (2)
	2015 - 2019 (2)
	2020 - 2024 (8)

Enzyme Classification Name

	Hydrolases (2)
	Transferases (2)
	Isomerases (1)
	Oxidoreductases (1)

Membrane Protein Annotation

	PDBTM (3)
	MemProtMD (2)
	mpstruc (2)

Symmetry Type

	Asymmetric (6)
	Cyclic (4)
	Dihedral (2)

SCOP Classification

	Alpha and beta proteins (a/b) (4)
	Alpha and beta proteins (a+b) (1)

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1 to 15 of 15 Structures

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1EHT \| pdb_00001eht	Download File View File

THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, 10 STRUCTURES

Zimmermann, G.R., Pardi, A.

(1997) Nat Struct Biol 4: 644-649

Released	1997-12-24
Method	SOLUTION NMR
Macromolecule	THEOPHYLLINE-BINDING RNA (nucleic acid)
Unique Ligands	TEP

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1O15 \| pdb_00001o15	Download File View File

THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT WITH TORSION ANGLE AND BASE-BASE POSITIONAL DATABASE POTENTIALS AND DIPOLAR COUPLINGS

Clore, G.M., Kuszewski, J.

(2003) J Am Chem Soc 125: 1518-1525

Released	2003-02-18
Method	SOLUTION NMR
Macromolecule	THEOPHYLLINE-BINDING RNA (nucleic acid)
Unique Ligands	TEP

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2A3A \| pdb_00002a3a	Download File View File

Crystal structure of Aspergillus fumigatus chitinase B1 in complex with theophylline

Rao, F.V., Andersen, O.A., Vora, K.A., DeMartino, J.A., van Aalten, D.M.F.

(2005) Chem Biol 12: 973-980

Released	2005-09-27
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Aspergillus fumigatus
Macromolecule	chitinase (protein)
Unique Ligands	SO4, TEP

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3ROX \| pdb_00003rox	Download File View File

Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Theophylline

Shumilin, I.A., Jha, K.N., Cymborowski, M., Herr, J.C., Minor, W.

(2012) Structure 20: 1715-1725

Released	2012-07-18
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Mus musculus
Macromolecule	Apolipoprotein A-I-binding protein (protein)
Unique Ligands	SO4, TEP

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4EOH \| pdb_00004eoh	Download File View File

Crystal Structure of Human PL Kinase with bound Theophylline

Safo, M.K., Gandhi, A.K., Musayev, F.N.

(2012) PLoS One 7: e40954-e40954

Released	2012-05-02
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Pyridoxal Kinase (protein)
Unique Ligands	MPD, NA, SO4, TEP

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5MZJ \| pdb_00005mzj	Download File View File

Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with theophylline at 2.0A resolution

Cheng, R.K.Y., Segala, E., Robertson, N., Deflorian, F., Dore, A.S., Errey, J.C., Fiez-Vandal, C., Marshall, F.H., Cooke, R.M.

(2017) Structure 25: 1275-1285.e4

Released	2017-07-26
Method	X-RAY DIFFRACTION 2 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562,Adenosine receptor A2a (protein)
Unique Ligands	CLR, NA, OLA, OLC, TEP

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6ICO \| pdb_00006ico	Download File View File

Pseudomonas putida CBB5 NdmA with theophylline

Kim, J.H., Kim, B.H., Kang, S.Y., Song, H.K.

(2019) J Mol Biology 431: 3647-3661

Released	2019-09-04
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Pseudomonas putida
Macromolecule	Methylxanthine N1-demethylase NdmA (protein)
Unique Ligands	CO, FES, TEP

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6TUZ \| pdb_00006tuz	Download File View File

Theophylline-Notum complex

Zhao, Y., Jones, E.Y.

(2020) Commun Biol 3: 555-555

Released	2020-10-28
Method	X-RAY DIFFRACTION 1.24 Å
Organisms	Homo sapiens
Macromolecule	Palmitoleoyl-protein carboxylesterase NOTUM (protein)
Unique Ligands	DMS, EDO, NAG, SO4, TEP

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7VRK \| pdb_00007vrk	Download File View File

crystal structure of BRD2-BD1 in complex with purine derivative

Padmanabhan, B., Arole, A., Deshmukh, P., Ashok, S., Mathur, S.

(2023) Acta Crystallogr D Struct Biol 79: 758-774

Released	2023-02-01
Method	X-RAY DIFFRACTION 2.48 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 2 (protein)
Unique Ligands	SO4, TEP

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7VRM \| pdb_00007vrm	Download File View File

crystal structure of BRD2-BD2 in complex with purine derivative

Padmanabhan, B., Arole, A., Deshmukh, P., Ashok, S., Mathur, S.

(2023) Acta Crystallogr D Struct Biol 79: 758-774

Released	2023-02-01
Method	X-RAY DIFFRACTION 1.1 Å
Organisms	Homo sapiens
Macromolecule	Bromodomain-containing protein 2 (protein)
Unique Ligands	TEP

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8A2O \| pdb_00008a2o	Download File View File

Room-temperature structure of the stabilised A2A-Theophylline complex determined by synchrotron serial crystallography

Moraes, I., Kwan, T.O.C., Axford, D.

(2023) J Appl Crystallogr 56: 1361-1370

Released	2023-08-30
Method	X-RAY DIFFRACTION 3.45 Å
Organisms	Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562 (protein)
Unique Ligands	CLR, NA, OLA, OLC, TEP

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8CK7 \| pdb_00008ck7	Download File View File

Avidin complexed to theophylline

De March, M.

(2023) Proteins 91: 1437-1443

Released	2023-12-27
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Gallus gallus
Macromolecule	Avidin (protein)
Unique Ligands	GOL, NAG, SO4, TEP

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8D28 \| pdb_00008d28	Download File View File

Crystal structure of theophylline aptamer in complex with theophylline

Menichelli, E., Spraggon, G.

(2022) Proc Natl Acad Sci U S A 119: e2213117119-e2213117119

Released	2022-11-30
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	synthetic construct
Macromolecule	RNA (33-MER) (nucleic acid)
Unique Ligands	MG, NA, TEP

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8PWN \| pdb_00008pwn	Download File View File

Structure of A2A adenosine receptor A2AR-StaR2-bRIL, solved at wavelength 2.75 A

El Omari, K., Duman, R., Mykhaylyk, V., Orr, C., Romano, M., Moraes, I., Wagner, A.

(2023) Commun Chem 6: 219-219

Released	2023-10-25
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Escherichia coli Homo sapiens
Macromolecule	Adenosine receptor A2a,Soluble cytochrome b562 (protein)
Unique Ligands	CLR, OLA, TEP

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9GRQ \| pdb_00009grq	Download File View File

SARS-CoV-2 methyltransferase nsp10-16 in complex with SAM and theophylline

Kremling, V., Sprenger, J., Oberthuer, D., Kiene, A.

To be published

Released	2024-09-25
Method	X-RAY DIFFRACTION 1.85 Å
Organisms	Severe acute respiratory syndrome coronavirus 2
Macromolecule	2'-O-methyltransferase nsp16 (protein) Non-structural protein 10 (protein)
Unique Ligands	EDO, MES, NA, SAM, TEP, ZN

1 to 15 of 15 Structures

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RCSB PDB Core Operations are funded by the U.S. National Science Foundation (DBI-2321666), the US Department of Energy (DE-SC0019749), and the National Cancer Institute, National Institute of Allergy and Infectious Diseases, and National Institute of General Medical Sciences of the National Institutes of Health under grant R01GM157729.

1EHT | pdb_00001eht

THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, 10 STRUCTURES

1O15 | pdb_00001o15

THEOPHYLLINE-BINDING RNA IN COMPLEX WITH THEOPHYLLINE, NMR, REGULARIZED MEAN STRUCTURE, REFINEMENT WITH TORSION ANGLE AND BASE-BASE POSITIONAL DATABASE POTENTIALS AND DIPOLAR COUPLINGS

2A3A | pdb_00002a3a

Crystal structure of Aspergillus fumigatus chitinase B1 in complex with theophylline

3ROX | pdb_00003rox

Crystal Structure of Mouse Apolipoprotein A-I Binding Protein in Complex with Theophylline

4EOH | pdb_00004eoh

Crystal Structure of Human PL Kinase with bound Theophylline

5MZJ | pdb_00005mzj

Crystal structure of stabilized A2A adenosine receptor A2AR-StaR2-bRIL in complex with theophylline at 2.0A resolution

6ICO | pdb_00006ico

Pseudomonas putida CBB5 NdmA with theophylline

6TUZ | pdb_00006tuz

Theophylline-Notum complex

7VRK | pdb_00007vrk

crystal structure of BRD2-BD1 in complex with purine derivative

7VRM | pdb_00007vrm

crystal structure of BRD2-BD2 in complex with purine derivative

8A2O | pdb_00008a2o

Room-temperature structure of the stabilised A2A-Theophylline complex determined by synchrotron serial crystallography

8CK7 | pdb_00008ck7

Avidin complexed to theophylline

8D28 | pdb_00008d28

Crystal structure of theophylline aptamer in complex with theophylline

8PWN | pdb_00008pwn

Structure of A2A adenosine receptor A2AR-StaR2-bRIL, solved at wavelength 2.75 A

9GRQ | pdb_00009grq

SARS-CoV-2 methyltransferase nsp10-16 in complex with SAM and theophylline

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1EHT | pdb_00001eht

1O15 | pdb_00001o15

2A3A | pdb_00002a3a

3ROX | pdb_00003rox

4EOH | pdb_00004eoh

5MZJ | pdb_00005mzj

6ICO | pdb_00006ico

6TUZ | pdb_00006tuz

7VRK | pdb_00007vrk

7VRM | pdb_00007vrm

8A2O | pdb_00008a2o

8CK7 | pdb_00008ck7

8D28 | pdb_00008d28

8PWN | pdb_00008pwn

9GRQ | pdb_00009grq