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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Expression Organism = "Komagataella phaffii CBS 7435"

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Search Summary

This query matches 68 Structures.

Refinements

Structure Determination Methodology

experimental (68)

Scientific Name of Source Organism

	Cyclocybe aegerita (17)
	Homo sapiens (12)
	Ostrinia furnacalis (11)
	Marasmius wettsteinii (9)
	Candolleomyces aberdarensis (7)
	Komagataella phaffii CBS 7435 (3)
	Sus scrofa (3)
	Aspergillus fischeri (2)
	Oryza sativa Japonica Group (2)
	Escherichia coli (1)

More...

Taxonomy

	Eukaryota (67)
	Bacteria (1)

Experimental Method

	X-RAY DIFFRACTION (66)
	ELECTRON MICROSCOPY (2)

Polymer Entity Type

Protein (68)

Refinement Resolution (Å)

	1.0 - 1.5 (9)
	1.5 - 2.0 (22)
	2.0 - 2.5 (24)
	2.5 - 3.0 (6)
	3.0 - 3.5 (6)
	3.5 - 4.0 (1)

Release Date

	2015 - 2019 (40)
	2020 - 2024 (21)
	2025 - 2029 (7)

Enzyme Classification Name

	Oxidoreductases (34)
	Hydrolases (16)

Membrane Protein Annotation

	PDBTM (4)
	mpstruc (4)
	OPM (3)
	MemProtMD (2)

Symmetry Type

	Asymmetric (46)
	Cyclic (21)
	Dihedral (1)

SCOP Classification

	Small proteins (9)
	All beta proteins (3)
	Alpha and beta proteins (a/b) (4)
	Artifacts (4)
	Multi-domain proteins (alpha and beta) (1)

AllSelected

1 to 25 of 68 Structures

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4TSR \| pdb_00004tsr	Download File View File

The Complex Structure of Mutant Phytase with IHS

Wu, T.H., Chen, C.C., Huang, C.H., Guo, R.T.

To be published

Released	2015-05-06
Method	X-RAY DIFFRACTION 2.07 Å
Organisms	Escherichia coli
Macromolecule	Periplasmic AppA protein (protein)
Unique Ligands	IHS, NI

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5BRR \| pdb_00005brr	Download File View File

Michaelis complex of tPA-S195A:PAI-1

Gong, L.

(2015) J Biological Chem 290: 25795-25804

Released	2015-09-02
Method	X-RAY DIFFRACTION 3.16 Å
Organisms	Homo sapiens
Macromolecule	Plasminogen activator inhibitor 1 (protein) Tissue-type plasminogen activator (protein)
Unique Ligands	GOL, PGE

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5CP9 \| pdb_00005cp9	Download File View File

The structure of the NK1 fragment of HGF/SF complexed with MB605

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)
Unique Ligands	6O5, EDO

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5CS1 \| pdb_00005cs1	Download File View File

The structure of the NK1 fragment of HGF/SF

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)

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5CS3 \| pdb_00005cs3	Download File View File

The structure of the NK1 fragment of HGF/SF complexed with (H)EPPS

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)
Unique Ligands	EP1

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5CS5 \| pdb_00005cs5	Download File View File

The structure of the NK1 fragment of HGF/SF complexed with PIPES

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)
Unique Ligands	PIN

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5CS9 \| pdb_00005cs9	Download File View File

The structure of the NK1 fragment of HGF/SF complexed with MES

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)
Unique Ligands	EDO, MES

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5CSQ \| pdb_00005csq	Download File View File

The structure of the NK1 fragment of HGF/SF complexed with MOPS

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)
Unique Ligands	MPO

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5CT1 \| pdb_00005ct1	Download File View File

The structure of the NK1 fragment of HGF/SF complexed with CHES

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)
Unique Ligands	NHE

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5CT2 \| pdb_00005ct2	Download File View File

The structure of the NK1 fragment of HGF/SF complexed with CAPS

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)
Unique Ligands	CXS

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5CT3 \| pdb_00005ct3	Download File View File

The structure of the NK1 fragment of HGF/SF complexed with 2FA

Sigurdardottir, A.G., Winter, A., Sobkowicz, A., Fragai, M., Chirgadze, D.Y., Ascher, D.B., Blundell, T.L., Gherardi, E.

(2015) Chem Sci 6: 6147-6157

Released	2015-08-12
Method	X-RAY DIFFRACTION 2 Å
Organisms	Homo sapiens
Macromolecule	Hepatocyte growth factor (protein)
Unique Ligands	54O

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5CTG \| pdb_00005ctg	Download File View File

The 3.1 A resolution structure of a eukaryotic SWEET transporter

Tao, Y., Perry, K., Feng, L.

(2015) Nature 527: 259-263

Released	2015-10-28
Method	X-RAY DIFFRACTION 3.103 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Bidirectional sugar transporter SWEET2b (protein)
Unique Ligands	BNG, PE5, TRS

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5CTH \| pdb_00005cth	Download File View File

The 3.7 A resolution structure of a eukaryotic SWEET transporter

Feng, L., Tao, Y., Perry, K.

(2015) Nature 527: 259-263

Released	2015-10-28
Method	X-RAY DIFFRACTION 3.69 Å
Organisms	Oryza sativa Japonica Group
Macromolecule	Bidirectional sugar transporter SWEET2b (protein)
Unique Ligands	BNG, MES, PE5

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5EZD \| pdb_00005ezd	Download File View File

Crystal structure of a Hepatocyte growth factor activator inhibitor-1 (HAI-1) fragment covering the PKD-like 'internal' domain and Kunitz domain 1

Hong, Z., Andreasen, P.A., Morth, J.P., Jensen, J.K.

(2016) J Biological Chem 291: 14340-14355

Released	2016-05-18
Method	X-RAY DIFFRACTION 2.1 Å
Organisms	Homo sapiens
Macromolecule	Kunitz-type protease inhibitor 1 (protein)
Unique Ligands	ACT, K

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5GPR \| pdb_00005gpr	Download File View File

Crystal structure of chitinase-h from Ostrinia furnacalis

Liu, T., Zhou, Y., Chen, L., Yang, Q.

(2017) J Biological Chem 292: 2080-2088

Released	2017-01-11
Method	X-RAY DIFFRACTION 3.23 Å
Organisms	Ostrinia furnacalis
Macromolecule	Chitinase (protein)
Unique Ligands	NAG

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5GQB \| pdb_00005gqb	Download File View File

Crystal structure of chitinase-h from O. furnacalis in complex with chitohepatose

Liu, T., Zhou, Y., Chen, L., Yang, Q.

(2017) J Biological Chem 292: 2080-2088

Released	2017-01-11
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Ostrinia furnacalis
Macromolecule	Chitinase (protein)
Unique Ligands	NAG
Unique branched monosaccharides	GCS, NAG

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5HGG \| pdb_00005hgg	Download File View File

Crystal structure of uPA in complex with a camelid-derived antibody fragment

Yung, K.W.Y., Kromann-Hansen, T., Andreasen, P.A., Ngo, J.C.K.

(2016) J Biological Chem 291: 15156-15168

Released	2016-06-01
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Homo sapiens Vicugna pacos
Macromolecule	Camelid Derived Antibody Fragment, Nb4 (protein) Urokinase-type plasminogen activator (protein)
Unique Ligands	GOL, MES, SO4, TWN

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5HSA \| pdb_00005hsa	Download File View File

Alcohol Oxidase AOX1 from Pichia Pastoris

Neumann, P., Ficner, R., Feussner, I., Koch, C.

(2016) PLoS One 11: e0149846-e0149846

Released	2016-03-09
Method	X-RAY DIFFRACTION 2.35 Å
Organisms	Komagataella phaffii CBS 7435
Macromolecule	Alcohol oxidase 1 (protein)
Unique Ligands	CA, CL, FAS, GOL, P6G, PGE, PO4

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5LYD \| pdb_00005lyd	Download File View File

Crystal structure of 1 in complex with tafCPB

Schreuder, H., Liesum, A., Loenze, P.

(2016) J Med Chem 59: 9567-9573

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.02 Å
Organisms	Sus scrofa
Macromolecule	Carboxypeptidase B (protein)
Unique Ligands	7B0, ZN

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5LYF \| pdb_00005lyf	Download File View File

Crystal structure of 1 in complex with tafCPB

Schreuder, H., Liesum, A., Loenze, P.

(2016) J Med Chem 59: 9567-9573

Released	2016-10-26
Method	X-RAY DIFFRACTION 2.01 Å
Organisms	Sus scrofa
Macromolecule	Carboxypeptidase B (protein)
Unique Ligands	7B6, ZN

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5LYI \| pdb_00005lyi	Download File View File

Crystal structure of 1 in complex with tafCPB

Schreuder, H., Liesum, A., Loenze, P.

(2016) J Med Chem 59: 9567-9573

Released	2016-10-26
Method	X-RAY DIFFRACTION 1.64 Å
Organisms	Sus scrofa
Macromolecule	Carboxypeptidase B (protein)
Unique Ligands	T4F, ZN

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5M5Z \| pdb_00005m5z	Download File View File

Chaetomium thermophilum beta-1-3-glucanase

Papageorgiou, A.C., Chen, J., Li, D.

(2017) Biochim Biophys Acta 1865: 1030-1038

Released	2017-05-17
Method	X-RAY DIFFRACTION 1.25 Å
Organisms	Thermochaetoides thermophila
Macromolecule	Beta-1,3-glucanase (protein)
Unique Ligands	CL, GOL, NA, NAG
Unique branched monosaccharides	NAG

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5OXT \| pdb_00005oxt	Download File View File

DIRECT-EVOLUTIONED UNSPECIFIC PEROXYGENASE FROM AGROCYBE AEGERITA, IN COMPLEX WITH ACETATE

Ramirez-Escudero, M., Sanz-Aparicio, J.

(2018) ACS Chem Biol 13: 3259-3268

Released	2019-04-17
Method	X-RAY DIFFRACTION 1.42 Å
Organisms	Cyclocybe aegerita
Macromolecule	UNSPECIFIC PEROXYGENASE (protein)
Unique Ligands	ACT, CL, HEM, MG, NAG

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5OXU \| pdb_00005oxu	Download File View File

Direct-evolutioned unspecific peroxygenase from Agrocybe aegerita

Ramirez-Escudero, M., Sanz-Aparicio, J.

(2018) ACS Chem Biol 13: 3259-3268

Released	2018-12-26
Method	X-RAY DIFFRACTION 1.47 Å
Organisms	Cyclocybe aegerita
Macromolecule	Aromatic peroxygenase (protein)
Unique Ligands	CL, GOL, HEM, MG, MOH, NAG, PO4

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5OY1 \| pdb_00005oy1	Download File View File

Direct-evolutioned unspecific peroxygenase from Agrocybe aegerita, in complex with DMSO

Ramirez-Escudero, M., Sanz-Aparicio, J.

(2018) ACS Chem Biol 13: 3259-3268

Released	2018-10-10
Method	X-RAY DIFFRACTION 1.43 Å
Organisms	Cyclocybe aegerita
Macromolecule	UNSPECIFIC PEROXYGENASE (protein)
Unique Ligands	CL, DMS, GOL, HEM, MG, NAG, PO4

1 to 25 of 68 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

4TSR | pdb_00004tsr

5BRR | pdb_00005brr

5CP9 | pdb_00005cp9

5CS1 | pdb_00005cs1

5CS3 | pdb_00005cs3

5CS5 | pdb_00005cs5

5CS9 | pdb_00005cs9

5CSQ | pdb_00005csq

5CT1 | pdb_00005ct1

5CT2 | pdb_00005ct2

5CT3 | pdb_00005ct3

5CTG | pdb_00005ctg

5CTH | pdb_00005cth

5EZD | pdb_00005ezd

5GPR | pdb_00005gpr

5GQB | pdb_00005gqb

5HGG | pdb_00005hgg

5HSA | pdb_00005hsa

5LYD | pdb_00005lyd

5LYF | pdb_00005lyf

5LYI | pdb_00005lyi

5M5Z | pdb_00005m5z

5OXT | pdb_00005oxt

5OXU | pdb_00005oxu

5OY1 | pdb_00005oy1