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234,136 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Human adenovirus 5"

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Search Summary

This query matches 24 Structures.

Refinements

Structure Determination Methodology

experimental (24)

Scientific Name of Source Organism

	Human adenovirus 5 (24)
	Homo sapiens (4)
	Mus musculus (3)
	Human adenovirus 2 (1)
	synthetic construct (1)

Taxonomy

	Varidnaviria (24)
	Eukaryota (7)
	other sequences (1)

Experimental Method

	X-RAY DIFFRACTION (15)
	ELECTRON MICROSCOPY (8)
	SOLUTION NMR (1)

Polymer Entity Type

Protein (24)

Refinement Resolution (Å)

	1.0 - 1.5 (1)
	1.5 - 2.0 (5)
	2.0 - 2.5 (2)
	2.5 - 3.0 (5)
	3.0 - 3.5 (3)
	3.5 - 4.0 (4)
	4.0 - 4.5 (1)
	> 4.5 (2)

Release Date

	1995 - 1999 (4)
	2000 - 2004 (1)
	2005 - 2009 (2)
	2010 - 2014 (7)
	2015 - 2019 (6)
	2020 - 2024 (4)

Enzyme Classification Name

	Hydrolases (2)
	Transferases (1)

Symmetry Type

	Asymmetric (13)
	Cyclic (9)
	Icosahedral (2)

SCOP Classification

	All beta proteins (6)
	Small proteins (6)
	All alpha proteins (6)
	Artifacts (1)

AllSelected

1 to 24 of 24 Structures

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1ADU \| pdb_00001adu	Download File View File

EARLY E2A DNA-BINDING PROTEIN

Tucker, P.A., Kanellopoulos, P.N., Tsernoglou, D., Van Der Vliet, P.C.

(1996) J Mol Biology 257: 1-8

Released	1996-06-20
Method	X-RAY DIFFRACTION 3 Å
Organisms	Human adenovirus 5
Macromolecule	ADENOVIRUS SINGLE-STRANDED DNA-BINDING PROTEIN (protein)
Unique Ligands	ZN

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1ADV \| pdb_00001adv	Download File View File

EARLY E2A DNA-BINDING PROTEIN

Kanellopoulos, P.N., Tsernoglou, D., Van Der Vliet, P.C., Tucker, P.A.

(1996) J Mol Biology 257: 1-8

Released	1996-06-20
Method	X-RAY DIFFRACTION 3.2 Å
Organisms	Human adenovirus 5
Macromolecule	ADENOVIRUS SINGLE-STRANDED DNA-BINDING PROTEIN (protein)
Unique Ligands	ZN

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1ANV \| pdb_00001anv	Download File View File

ADENOVIRUS 5 DBP/URANYL FLUORIDE SOAK

Kanellopoulos, P.N., Tsernoglou, D., Van Der Vliet, P.C., Tucker, P.A.

(1996) Acta Crystallogr D Biol Crystallogr 52: 942-945

Released	1997-02-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Human adenovirus 5
Macromolecule	ADENOVIRUS SINGLE-STRANDED DNA-BINDING PROTEIN (protein)
Unique Ligands	IUM, ZN

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1KNB \| pdb_00001knb	Download File View File

CRYSTAL STRUCTURE OF THE RECEPTOR-BINDING DOMAIN OF ADENOVIRUS TYPE 5 FIBER PROTEIN AT 1.7 ANGSTROMS RESOLUTION

Xia, D., Henry, L.J., Gerard, R.D., Deisenhofer, J.

(1994) Structure 2: 1259-1270

Released	1995-03-31
Method	X-RAY DIFFRACTION 1.7 Å
Organisms	Human adenovirus 5
Macromolecule	ADENOVIRUS TYPE 5 FIBER PROTEIN (protein)

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1P30 \| pdb_00001p30	Download File View File

Refinement of Adenovirus Type 5 Hexon with CNS

Rux, J.J., Kuser, P.R., Burnett, R.M.

(2003) J Virol 77: 9553-9566

Released	2003-11-11
Method	X-RAY DIFFRACTION 2.5 Å
Organisms	Human adenovirus 5
Macromolecule	Hexon protein (protein)

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2KJE \| pdb_00002kje	Download File View File

NMR structure of CBP TAZ2 and adenoviral E1A complex

Ferreon, J.C., Martinez-Yamout, M., Dyson, H., Wright, P.E.

(2009) Proc Natl Acad Sci U S A 106: 13260-13265

Released	2009-09-15
Method	SOLUTION NMR
Organisms	Homo sapiens Human adenovirus 5
Macromolecule	CREB-binding protein (protein) Early E1A 32 kDa protein (protein)
Unique Ligands	ZN

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2R7G \| pdb_00002r7g	Download File View File

Structure of the retinoblastoma protein pocket domain in complex with adenovirus E1A CR1 domain

Liu, X., Marmorstein, R.

(2007) Genes Dev 21: 2711-2716

Released	2007-10-02
Method	X-RAY DIFFRACTION 1.671 Å
Organisms	Homo sapiens Human adenovirus 5
Macromolecule	Early E1A 32 kDa protein (protein) Retinoblastoma-associated protein (protein)
Unique Ligands	SO4

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2WAZ \| pdb_00002waz	Download File View File

N512P mutant of the DNA binding domain of the Adenovirus 5 ssDNA binding protein

Hendle, J., Kanellopoulos, P.N., Tucker, P.A.

To be published

Released	2010-03-31
Method	X-RAY DIFFRACTION 2.3 Å
Organisms	Human adenovirus 5
Macromolecule	E2A DNA-BINDING PROTEIN (protein)
Unique Ligands	ZN

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2WB0 \| pdb_00002wb0	Download File View File

2.1 resolution structure of the C-terminal domain of the human adenovirus 5 ssDNA binding protein

Hendle, J., Kanellopoulos, P.N., Tucker, P.A.

To be published

Released	2010-03-31
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human adenovirus 5
Macromolecule	E2A DNA-BINDING PROTEIN (protein)
Unique Ligands	ZN

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3IZO \| pdb_00003izo	Download File View File

Model of the fiber tail and its interactions with the penton base of human adenovirus by cryo-electron microscopy

Liu, H.

(2011) J Mol Biology 406: 764-774

Released	2011-01-05
Method	ELECTRON MICROSCOPY 3.6 Å
Organisms	Human adenovirus 5
Macromolecule	Fiber (protein) Penton protein (protein)

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3TG7 \| pdb_00003tg7	Download File View File

Crystal structure of Adenovirus serotype 5 hexon at 1.6A resolution

Zhu, Y., Roszak, A.W., Isaacs, N.W., McVey, J.H., Nicklin, S.A., Baker, A.H.

To be published

Released	2011-11-02
Method	X-RAY DIFFRACTION 1.57 Å
Organisms	Human adenovirus 5
Macromolecule	Hexon protein (protein)

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4ATZ \| pdb_00004atz	Download File View File

Ad5 knob in complex with a designed ankyrin repeat protein

Mittl, P.R.E., Hess, C., Dreier, B.

(2013) Proc Natl Acad Sci U S A 110: E869-E877

Released	2013-02-27
Method	X-RAY DIFFRACTION 1.95 Å
Organisms	Human adenovirus 5 synthetic construct
Macromolecule	DESIGNED ANKYRIN REPEAT PROTEIN (protein) Fiber protein (protein)

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4DJB \| pdb_00004djb	Download File View File

A Structural Basis for the Assembly and Functions of a Viral Polymer that Inactivates Multiple Tumor Suppressors

Ou, H.D., Kwiatkowski, W., Deerinck, T.J., Noske, A., Blain, K.Y., Land, H.S., Soria, C., Powers, C.J., May, A.P., Shu, X., Tsien, R.Y., Fitzpatrick, J.A.J., Long, J.A., Ellisman, M.H., Choe, S., O'Shea, C.C.

(2012) Cell 151: 304-319

Released	2012-10-31
Method	X-RAY DIFFRACTION 2.053 Å
Organisms	Human adenovirus 5
Macromolecule	E4-ORF3 (protein)

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4V4U \| pdb_00004v4u	Download File View File

The quasi-atomic model of Human Adenovirus type 5 capsid

Fabry, C.M.S., Rosa-Calatrava, M., Conway, J.F., Zubieta, C., Cusack, S., Ruigrok, R.W.H., Schoehn, G.

(2005) EMBO J 24: 1645

Released	2014-07-09
Method	ELECTRON MICROSCOPY 10 Å
Organisms	Human adenovirus 2 Human adenovirus 5
Macromolecule	HEXON PROTEIN (protein) N-TERMINAL PEPTIDE OF FIBER PROTEIN (protein) PENTON PROTEIN (protein)

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5LDN \| pdb_00005ldn	Download File View File

A viral capsid:antibody complex

James, L.

(2016) Sci Rep 6: 37457-37457

Released	2017-07-12
Method	X-RAY DIFFRACTION 2.7 Å
Organisms	Human adenovirus 5 Mus musculus
Macromolecule	Hexon protein,hexon capsid (protein) antibody (protein)

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5OGI \| pdb_00005ogi	Download File View File

Complex of a binding protein and human adenovirus C 5 hexon

Schmid, M., Ernst, P., Honegger, A., Suomalainen, M., Zimmermann, M., Braun, L., Stauffer, S., Thom, C., Dreier, B., Eibauer, M., Kipar, A., Vogel, V., Greber, U.F., Medalia, O., Plueckthun, A.

(2018) Nat Commun 9: 450-450

Released	2018-02-07
Method	X-RAY DIFFRACTION 2.8 Å
Organisms	Human adenovirus 5 Mus musculus
Macromolecule	Hexon protein (protein) scFv of 9C12 antibody (protein)
Unique Ligands	DIO, EDO, MES, SO4

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6B1T \| pdb_00006b1t	Download File View File

Improved cryoEM structure of human adenovirus type 5 with atomic details of minor proteins VI and VII

Dai, X.H., Wu, L., Sun, R., Zhou, Z.H.

(2017) J Virol 91:

Released	2017-09-27
Method	ELECTRON MICROSCOPY 3.2 Å
Organisms	Human adenovirus 5
Macromolecule	Unique protein chains: 8

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6CGV \| pdb_00006cgv	Download File View File

Revised crystal structure of human adenovirus

Natchiar, S.K., Venkataraman, S., Nemerow, G.R., Reddy, V.S.

(2018) J Mol Biology 430: 4132-4141

Released	2018-04-25
Method	X-RAY DIFFRACTION 3.8 Å
Organisms	Human adenovirus 5
Macromolecule	Unique protein chains: 6

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6EQC \| pdb_00006eqc	Download File View File

Cryo-EM reconstruction of a complex of a binding protein and human adenovirus C5 hexon

Schmid, M., Ernst, P., Honegger, A., Suomalainen, M., Zimmermann, M., Braun, L., Stauffer, S., Thom, C., Dreier, B., Eibauer, M., Kipar, A., Vogel, V., Greber, U.F., Medalia, O., Plueckthun, A.

(2018) Nat Commun 9: 450-450

Released	2018-02-07
Method	ELECTRON MICROSCOPY 7.4 Å
Organisms	Human adenovirus 5 Mus musculus
Macromolecule	Hexon protein (protein) scFv of 9C12 antibody (protein)

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6HCN \| pdb_00006hcn	Download File View File

Adenovirus Type 5 Fiber Knob protein at 1.49A resolution

Rizkallah, P.J., Parker, A.L., Baker, A.T.

(2019) Nat Commun 10: 741-741

Released	2019-02-13
Method	X-RAY DIFFRACTION 1.49 Å
Organisms	Human adenovirus 5
Macromolecule	Fiber protein (protein)
Unique Ligands	EDO, MG

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7S78 \| pdb_00007s78	Download File View File

Structure of a cell-entry defective human adenovirus provides insights into precursor proteins and capsid maturation

Reddy, V.S., Yu, X.

(2021) J Mol Biology 434: 167350-167350

Released	2021-12-01
Method	ELECTRON MICROSCOPY 3.72 Å
Organisms	Human adenovirus 5
Macromolecule	Unique protein chains: 8

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8Q7C \| pdb_00008q7c	Download File View File

Cryo-EM structure of Adenovirus C5 hexon

Zoll, S., Dhillon, A.

(2024) J Virol 98: e0157623-e0157623

Released	2023-08-30
Method	ELECTRON MICROSCOPY 2.9 Å
Organisms	Human adenovirus 5
Macromolecule	Hexon protein (protein)

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9CLI \| pdb_00009cli	Download File View File

Cryo-EM model derived from localized reconstruction of human adenovirus (Ad5)-hexon-FX complex at 3.6A resolution

Reddy, V.S., Ma, O.X.

(2024) Nat Commun 15: 9768-9768

Released	2024-11-27
Method	ELECTRON MICROSCOPY 3.61 Å
Organisms	Homo sapiens Human adenovirus 5
Macromolecule	Coagulation factor X (protein) Hexon protein (protein)
Unique Ligands	CA

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9CLN \| pdb_00009cln	Download File View File

Cryo-EM model derived from localized reconstruction of human adenovirus 5 (Ad5)-hexon-FII complex at 3.9A resolution

Reddy, V.S., Ma, O.X.

(2024) Nat Commun 15: 9768-9768

Released	2024-11-27
Method	ELECTRON MICROSCOPY 4.13 Å
Organisms	Homo sapiens Human adenovirus 5
Macromolecule	Hexon protein (protein) Prothrombin (protein)
Unique Ligands	CA

1 to 24 of 24 Structures

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Symmetry Type

SCOP Classification

1ADU | pdb_00001adu

1ADV | pdb_00001adv

1ANV | pdb_00001anv

1KNB | pdb_00001knb

1P30 | pdb_00001p30

2KJE | pdb_00002kje

2R7G | pdb_00002r7g

2WAZ | pdb_00002waz

2WB0 | pdb_00002wb0

3IZO | pdb_00003izo

3TG7 | pdb_00003tg7

4ATZ | pdb_00004atz

4DJB | pdb_00004djb

4V4U | pdb_00004v4u

5LDN | pdb_00005ldn

5OGI | pdb_00005ogi

6B1T | pdb_00006b1t

6CGV | pdb_00006cgv

6EQC | pdb_00006eqc

6HCN | pdb_00006hcn

7S78 | pdb_00007s78

8Q7C | pdb_00008q7c

9CLI | pdb_00009cli

9CLN | pdb_00009cln