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233,605 Structures from the PDB

1,068,577 Computed Structure Models (CSM)

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QUERY: Source Organism Taxonomy Name (Full Lineage) = "Lactococcus lactis subsp. lactis Il1403"

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Search Summary

This query matches 321 Structures.

Refinements

Structure Determination Methodology

experimental (321)

Scientific Name of Source Organism

	Homo sapiens (187)
	Saccharomyces cerevisiae (40)
	Bos taurus (33)
	synthetic construct (27)
	Mus musculus (24)
	Xenopus laevis (23)
	Arabidopsis thaliana (16)
	Oryctolagus cuniculus (16)
	Drosophila melanogaster (11)
	Saccharomyces cerevisiae S288C (6)

More...

Taxonomy

	Eukaryota (320)
	other sequences (27)
	Eukaryota (eukaryotes) (26)
	Riboviria (7)
	Bacteria (4)
	unclassified sequences (1)

Experimental Method

	X-RAY DIFFRACTION (238)
	ELECTRON MICROSCOPY (63)
	SOLUTION NMR (20)

Polymer Entity Type

	Protein (321)
	DNA (19)
	RNA (18)

Refinement Resolution (Å)

	0.5 - 1.0 (1)
	1.0 - 1.5 (16)
	1.5 - 2.0 (107)
	2.0 - 2.5 (72)
	2.5 - 3.0 (49)
	3.0 - 3.5 (25)
	3.5 - 4.0 (16)
	4.0 - 4.5 (4)
	> 4.5 (11)

Release Date

	1980 - 1984 (1)
	1990 - 1994 (15)
	1995 - 1999 (14)
	2000 - 2004 (5)
	2005 - 2009 (50)
	2010 - 2014 (73)
	2015 - 2019 (61)
	2020 - 2024 (94)
	2025 - 2029 (8)

Enzyme Classification Name

	Oxidoreductases (40)
	Transferases (52)
	Hydrolases (28)
	Translocases (18)
	Lyases (23)
	Ligases (9)
	Isomerases (2)

Membrane Protein Annotation

	mpstruc (22)
	PDBTM (16)
	OPM (14)
	MemProtMD (12)

Symmetry Type

	Asymmetric (279)
	Cyclic (41)
	Dihedral (5)

SCOP Classification

	Alpha and beta proteins (a+b) (8)
	All beta proteins (24)
	All alpha proteins (38)
	Membrane and cell surface proteins and peptides (3)
	Alpha and beta proteins (a/b) (5)
	Small proteins (11)
	Artifacts (11)

AllSelected

1 to 25 of 321 Structures

Page 1 of 13

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1CCR \| pdb_00001ccr	Download File View File

STRUCTURE OF RICE FERRICYTOCHROME C AT 2.0 ANGSTROMS RESOLUTION

Ochi, H., Hata, Y., Tanaka, N., Kakudo, M., Sakurai, T., Aihara, S., Morita, Y.

(1983) J Mol Biology 166: 407-418

Released	1983-04-21
Method	X-RAY DIFFRACTION 1.5 Å
Organisms	Oryza sativa
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC

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1CHH \| pdb_00001chh	Download File View File

STRUCTURAL STUDIES OF THE ROLES OF RESIDUES 82 AND 85 AT THE INTERACTIVE FACE OF CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Biochemistry 34: 163-171

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.97 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CHI \| pdb_00001chi	Download File View File

STRUCTURAL STUDIES OF THE ROLES OF RESIDUES 82 AND 85 AT THE INTERACTIVE FACE OF CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Biochemistry 34: 163-171

Released	1994-12-20
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CHJ \| pdb_00001chj	Download File View File

STRUCTURAL STUDIES OF THE ROLES OF RESIDUES 82 AND 85 AT THE INTERACTIVE FACE OF CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Biochemistry 34: 163-171

Released	1994-12-20
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CIE \| pdb_00001cie	Download File View File

STRUCTURAL AND FUNCTIONAL EFFECTS OF MULTIPLE MUTATIONS AT DISTAL SITES IN CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Biochemistry 34: 5259-5268

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CIF \| pdb_00001cif	Download File View File

STRUCTURAL AND FUNCTIONAL EFFECTS OF MULTIPLE MUTATIONS AT DISTAL SITES IN CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Biochemistry 34: 5259-5268

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CIG \| pdb_00001cig	Download File View File

STRUCTURAL AND FUNCTIONAL EFFECTS OF MULTIPLE MUTATIONS AT DISTAL SITES IN CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Biochemistry 34: 5259-5268

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CIH \| pdb_00001cih	Download File View File

STRUCTURAL AND FUNCTIONAL EFFECTS OF MULTIPLE MUTATIONS AT DISTAL SITES IN CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Biochemistry 34: 5259-5268

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.8 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CRG \| pdb_00001crg	Download File View File

THE ROLE OF A CONSERVED INTERNAL WATER MOLECULE AND ITS ASSOCIATED HYDROGEN BOND NETWORK IN CYTOCHROME C

Berghuis, A.M., Brayer, G.D.

(1994) J Mol Biology 236: 786-799

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CRH \| pdb_00001crh	Download File View File

THE ROLE OF A CONSERVED INTERNAL WATER MOLECULE AND ITS ASSOCIATED HYDROGEN BOND NETWORK IN CYTOCHROME C

Berghuis, A.M., Brayer, G.D.

(1994) J Mol Biology 236: 786-799

Released	1994-01-31
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CRI \| pdb_00001cri	Download File View File

THE ROLE OF A CONSERVED INTERNAL WATER MOLECULE AND ITS ASSOCIATED HYDROGEN BOND NETWORK IN CYTOCHROME C

Berghuis, A.M., Brayer, G.D.

(1994) J Mol Biology 236: 786-799

Released	1994-01-31
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEM, SO4

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1CRJ \| pdb_00001crj	Download File View File

THE ROLE OF A CONSERVED INTERNAL WATER MOLECULE AND ITS ASSOCIATED HYDROGEN BOND NETWORK IN CYTOCHROME C

Berghuis, A.M., Brayer, G.D.

(1994) J Mol Biology 236: 786-799

Released	1994-01-31
Method	X-RAY DIFFRACTION 2.05 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CSU \| pdb_00001csu	Download File View File

REPLACEMENTS IN A CONSERVED LEUCINE CLUSTER IN THE HYDROPHOBIC HEME POCKET OF CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Protein Sci 4: 198-208

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.81 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CSV \| pdb_00001csv	Download File View File

REPLACEMENTS IN A CONSERVED LEUCINE CLUSTER IN THE HYDROPHOBIC HEME POCKET OF CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Protein Sci 4: 198-208

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CSW \| pdb_00001csw	Download File View File

REPLACEMENTS IN A CONSERVED LEUCINE CLUSTER IN THE HYDROPHOBIC HEME POCKET OF CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Protein Sci 4: 198-208

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

Explore in 3D

1CSX \| pdb_00001csx	Download File View File

REPLACEMENTS IN A CONSERVED LEUCINE CLUSTER IN THE HYDROPHOBIC HEME POCKET OF CYTOCHROME C

Lo, T.P., Brayer, G.D.

(1995) Protein Sci 4: 198-208

Released	1995-01-26
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CTY \| pdb_00001cty	Download File View File

MUTATION OF TYROSINE-67 IN CYTOCHROME C SIGNIFICANTLY ALTERS THE LOCAL HEME ENVIRONMENT

Berghuis, A.M., Brayer, G.D.

(1994) J Mol Biology 235: 1326-1341

Released	1993-07-15
Method	X-RAY DIFFRACTION 2.2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1CTZ \| pdb_00001ctz	Download File View File

MUTATION OF TYROSINE-67 IN CYTOCHROME C SIGNIFICANTLY ALTERS THE LOCAL HEME ENVIRONMENT

Berghuis, A.M., Brayer, G.D.

(1994) J Mol Biology 235: 1326-1341

Released	1993-07-15
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEC, SO4

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1FHB \| pdb_00001fhb	Download File View File

THREE-DIMENSIONAL SOLUTION STRUCTURE OF THE CYANIDE ADDUCT OF A MET80ALA VARIANT OF SACCHAROMYCES CEREVISIAE ISO-1-CYTOCHROME C. IDENTIFICATION OF LIGAND-RESIDUE INTERACTIONS IN THE DISTAL HEME CAVITY

Banci, L., Bertini, I., Bren, K.L., Gray, H.B., Sompornpisut, P., Turano, P.

(1995) Biochemistry 34: 11385-11398

Released	1995-09-15
Method	SOLUTION NMR
Organisms	Saccharomyces cerevisiae
Macromolecule	FERRICYTOCHROME C (protein)
Unique Ligands	CYN, HEM

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1IRV \| pdb_00001irv	Download File View File

CYTOCHROME C ISOZYME 1, REDUCED, MUTANT WITH ILE 75 REPLACED BY MET AND CYS 102 REPLACED BY THR

Berghuis, A.M., Brayer, G.D.

(1996) Biochemistry 35: 10784-10792

Released	1997-01-11
Method	X-RAY DIFFRACTION 1.9 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEM, SO4

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1IRW \| pdb_00001irw	Download File View File

CYTOCHROME C ISOZYME 1, REDUCED, MUTANT WITH ASN 52 REPLACED BY ALA AND CYS 102 REPLACED BY THR

Berghuis, A.M., Brayer, G.D.

(1996) Biochemistry 35: 10784-10792

Released	1997-01-11
Method	X-RAY DIFFRACTION 2 Å
Organisms	Saccharomyces cerevisiae
Macromolecule	CYTOCHROME C (protein)
Unique Ligands	HEM, SO4

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1KNE \| pdb_00001kne	Download File View File

Chromo domain of HP1 complexed with histone H3 tail containing trimethyllysine 9

Jacobs, S.A., Khorasanizadeh, S.

(2002) Science 295: 2080-2083

Released	2002-03-20
Method	X-RAY DIFFRACTION 2.4 Å
Organisms	Drosophila melanogaster
Macromolecule	HETEROCHROMATIN PROTEIN 1 (protein) Trimethylated Histone H3 (protein)

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1KYO \| pdb_00001kyo	Download File View File

YEAST CYTOCHROME BC1 COMPLEX WITH BOUND SUBSTRATE CYTOCHROME C

Lange, C., Hunte, C.

(2002) Proc Natl Acad Sci U S A 99: 2800-2805

Released	2002-03-06
Method	X-RAY DIFFRACTION 2.97 Å
Organisms	Mus musculus Saccharomyces cerevisiae
Macromolecule	Unique protein chains: 12
Unique Ligands	FES, HEC, SMA

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1PDQ \| pdb_00001pdq	Download File View File

Polycomb chromodomain complexed with the histone H3 tail containing trimethyllysine 27.

Fischle, W., Wang, Y., Jacobs, S.A., Kim, Y., Allis, C.D., Khorasanizadeh, S.

(2003) Genes Dev 17: 1870-1881

Released	2003-08-26
Method	X-RAY DIFFRACTION 1.76 Å
Organisms	Drosophila melanogaster Homo sapiens
Macromolecule	Histone H3.3 (protein) Polycomb protein (protein)

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1PFB \| pdb_00001pfb	Download File View File

Structural Basis for specific binding of polycomb chromodomain to histone H3 methylated at K27

Min, J.R., Zhang, Y., Xu, R.-M.

(2003) Genes Dev 17: 1823-1828

Released	2003-10-07
Method	X-RAY DIFFRACTION 1.4 Å
Organisms	Drosophila melanogaster Strongylocentrotus purpuratus
Macromolecule	Histone H3, embryonic (protein) Polycomb protein (protein)
Unique Ligands	ACY, BME, CL

1 to 25 of 321 Structures

Page 1 of 13

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Structure Determination Methodology

Scientific Name of Source Organism

Taxonomy

Experimental Method

Polymer Entity Type

Refinement Resolution (Å)

Release Date

Enzyme Classification Name

Membrane Protein Annotation

Symmetry Type

SCOP Classification

1CCR | pdb_00001ccr

1CHH | pdb_00001chh

1CHI | pdb_00001chi

1CHJ | pdb_00001chj

1CIE | pdb_00001cie

1CIF | pdb_00001cif

1CIG | pdb_00001cig

1CIH | pdb_00001cih

1CRG | pdb_00001crg

1CRH | pdb_00001crh

1CRI | pdb_00001cri

1CRJ | pdb_00001crj

1CSU | pdb_00001csu

1CSV | pdb_00001csv

1CSW | pdb_00001csw

1CSX | pdb_00001csx

1CTY | pdb_00001cty

1CTZ | pdb_00001ctz

1FHB | pdb_00001fhb

1IRV | pdb_00001irv

1IRW | pdb_00001irw

1KNE | pdb_00001kne

1KYO | pdb_00001kyo

1PDQ | pdb_00001pdq

1PFB | pdb_00001pfb